RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 IGKV3-15P01624 115 aa13.48□□□□□ -0.25
SHMT2-232ENST00000557487 IGHV3-43DP0DP04 118 aa13.48□□□□□ -0.25
SHMT2-232ENST00000557487 TPTE2P1Q5T6R2 138 aa13.48□□□□□ -0.25
SHMT2-232ENST00000557487 TOMM20LQ6UXN7 152 aa13.48□□□□□ -0.25
SHMT2-232ENST00000557487 Q6ZT83 130 aa13.48□□□□□ -0.25
SHMT2-232ENST00000557487 TCF23Q7RTU1 214 aa13.48□□□□□ -0.25
SHMT2-232ENST00000557487 SDSLQ96GA7 329 aa13.48□□□□□ -0.25
SHMT2-232ENST00000557487 EAF1Q96JC9 268 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-232ENST00000557487 NCOR1P1Q9H4R4 102 aa13.48□□□□□ -0.25
SHMT2-232ENST00000557487 TMEM167BQ9NRX6 74 aa13.48□□□□□ -0.25
SHMT2-232ENST00000557487 GNG12Q9UBI6 72 aa13.48□□□□□ -0.25
SHMT2-232ENST00000557487 TCF19Q9Y242 345 aa13.48□□□□□ -0.25
SHMT2-232ENST00000557487 PGPEP1LA6NFU8 196 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 M0R1X1 148 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 TIMM8AO60220 97 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-232ENST00000557487 HOXC12P31275 282 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 RAB7AP51149 207 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 ATP5IP56385 69 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-232ENST00000557487 FOXC1Q12948 553 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 EFNB3Q15768 340 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 Q6ZWC4 215 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 GCNT2Q8N0V5 402 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-232ENST00000557487 OR1L6Q8NGR2 347 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 OR4S2Q8NH73 311 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 SPRR3Q9UBC9 169 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 TP53TG3Q9ULZ0 132 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 CACNA1AO00555 2505 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 F2RL2O00254 374 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 MGST3O14880 152 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 PRDX2P32119 198 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 RTL8BQ17RB0 113 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 DHRS13Q6UX07 377 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 ZNF705AQ6ZN79 300 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-232ENST00000557487 RFESDQ8TAC1 157 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 WFIKKN1Q96NZ8 548 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 DEFB127Q9H1M4 99 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 TMEM140Q9NV12 185 aa13.47□□□□□ -0.25
SHMT2-232ENST00000557487 FOXA2Q9Y261 457 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-232ENST00000557487 CNOT1A5YKK6 2376 aaKnown RBP13.46□□□□□ -0.25
SHMT2-232ENST00000557487 SAA2-SAA4A0A096LPE2 208 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 IGHV3-64DA0A0J9YX35 117 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 C15orf61A6NNL5 157 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 DEFB108AA8MXU0 73 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 FCN1O00602 326 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 AQP7O14520 342 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 PROP1O75360 226 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 SERF1AO75920 110 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 CBLN1P23435 193 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 OR10J3Q5JRS4 329 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 MBNL2Q5VZF2 373 aaKnown RBP13.46□□□□□ -0.25
SHMT2-232ENST00000557487 VASH2Q86V25 355 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 CXorf67Q86X51 503 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-232ENST00000557487 BAGE3Q86Y29 109 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 BAGE2Q86Y30 109 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 MMD2Q8IY49 270 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 STPG3Q8N7X2 389 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 TMEM178AQ8NBL3 297 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 VAMP8Q9BV40 100 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 C19orf24Q9BVV8 132 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 ENY2Q9NPA8 101 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 FOXJ2Q9P0K8 574 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 SLC45A2Q9UMX9 530 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 USF3Q68DE3 2245 aa13.46□□□□□ -0.25
SHMT2-232ENST00000557487 GRIFINA4D1Z8 144 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 K7EN84 100 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 MMP23AO75900 390 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 BMP5P22003 454 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 NPY1RP25929 384 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 FAM214BQ7L5A3 538 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 CD177Q8N6Q3 437 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 SLC24A4Q8NFF2 622 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 HSPB9Q9BQS6 159 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 ATG101Q9BSB4 218 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 SCNM1Q9BWG6 230 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 METRNQ9UJH8 293 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 A0A1B0GUS0 222 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 CFHR2P36980 270 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 LINC00310P59036 64 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 HSPE1P61604 102 aaKnown RBP13.45□□□□□ -0.26
SHMT2-232ENST00000557487 PRR20EP86478 221 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 PRR20CP86479 221 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 PRR20DP86480 221 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 PRR20BP86481 221 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 PRR20AP86496 221 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 OR4B1Q8NGF8 309 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 Q8TCH9 128 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 DDB2Q92466 427 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 ADTRPQ96IZ2 230 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 SAMD10Q9BYL1 202 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 OSTCQ9NRP0 149 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 ZNF586Q9NXT0 402 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 CLCF1Q9UBD9 225 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 IL19Q9UHD0 177 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 MSRB2Q9Y3D2 182 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 V9GYV3 84 aa13.45□□□□□ -0.26
SHMT2-232ENST00000557487 GTF3C1Q12789 2109 aa13.44□□□□□ -0.26
SHMT2-232ENST00000557487 LYZL6O75951 148 aa13.44□□□□□ -0.26
SHMT2-232ENST00000557487 REG1AP05451 166 aa13.44□□□□□ -0.26
SHMT2-232ENST00000557487 OR5G3P0C626 314 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms