RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TMEM136	Q6ZRR5	245 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	WFDC3	Q8IUB2	231 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	MBD3L1	Q8WWY6	194 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	PMCHL2	Q9BQD1	86 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	TMEM106B	Q9NUM4	274 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	NUP210L	Q5VU65	1888 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	ANAPC1	Q9H1A4	1944 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	MUC21	A0A0G2JKD1	596 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	MUC21	A0A140T8X8	626 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	PGP	A6NDG6	321 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	C12orf77	C9JDV5	145 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	CD33	P20138	364 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	TIMP3	P35625	211 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	FOXA3	P55318	350 aa	Predicted RBP	4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	RPL31	P62899	125 aa	Known RBP	4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	MUC21	Q5SSG8	566 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	ACP7	Q6ZNF0	438 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	LINC00305	Q7Z4B0	112 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	LRTM2	Q8N967	370 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	FAM222B	Q8WU58	562 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	OR2V2	Q96R30	315 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	RASL11B	Q9BPW5	248 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	SNHG12	Q9BXW3	62 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	PCED1A	Q9H1Q7	454 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	LIME1	Q9H400	295 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	IDI2-AS1	Q9NZ38	188 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	TMEM250	H0YL14	139 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005		J3QR89	54 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	ORM1	P02763	201 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	MGP	P08493	103 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	FAM87A	P0C7U9	286 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	ZNF146	Q15072	292 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	ATP1A1-AS1	Q5TC04	95 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	TMEM116	Q8NCL8	245 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	MGST2	Q99735	147 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	RNF7	Q9UBF6	113 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	SLC25A10	Q9UBX3	287 aa	Predicted RBP	4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	C7orf71	A4D174	169 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	CORT	O00230	105 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	MPDU1	O75352	247 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	NAPSA	O96009	420 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	IGHV3-23	P01764	117 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	FABP2	P12104	132 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	LINC00205	P59089	165 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	HBB	P68871	147 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	PET117	Q6UWS5	81 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	C20orf204	Q6ZNR8	217 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	SMRP1	Q8NCR6	262 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	KLF14	Q8TD94	323 aa	Predicted RBP	4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	GMPPA	Q96IJ6	420 aa	Predicted RBP	4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	ADTRP	Q96IZ2	230 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	ZNF703	Q9H7S9	590 aa	Predicted RBP	4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	ELOVL5	Q9NYP7	299 aa		4.19	□□□□□ -1.74
SYNE2-223	ENST00000557005	TMEM265	A0A087WTH1	108 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	TRAV5	A0A0B4J249	113 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005		A0A1W2PQM1	296 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	SLC25A17	O43808	307 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	CRYGS	P22914	178 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	HS3ST6	Q96QI5	342 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	TMEM70	Q9BUB7	260 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	CALY	Q9NYX4	217 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	MYOF	Q9NZM1	2061 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	ID3	Q02535	119 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	TBR1	Q16650	682 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	GUCD1	Q96NT3	240 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	SIGLEC12	Q96PQ1	595 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	TCF19	Q9Y242	345 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	DENND4C	Q5VZ89	1909 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	TRBV24-1	A0A075B6N3	115 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005		A0A1W2PR77	199 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	IGKV1-5	P01602	117 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	GCSH	P23434	173 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	NMS	Q5H8A3	153 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	ARL6IP6	Q8N6S5	226 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	TMEM208	Q9BTX3	173 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	TICRR	Q7Z2Z1	1910 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	APOH	P02749	345 aa	Predicted RBP	4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	MYOD1	P15172	320 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	FAM201A	Q5SY85	155 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	NUDT10	Q8NFP7	164 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	SARAF	Q96BY9	339 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	ASCL2	Q99929	193 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	ALPK3	Q96L96	1907 aa		4.18	□□□□□ -1.74
SYNE2-223	ENST00000557005	TRAV3	A0A0B4J244	114 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	CGB1	A6NKQ9	187 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	ZNF324	O75467	553 aa	Predicted RBP	4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	C8orf88	P0DMB2	117 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	TCF24	Q7RTU0	167 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	NIT1	Q86X76	327 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	ZIC4	Q8N9L1	334 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	SRSF12	Q8WXF0	261 aa	Known RBP	4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	RPE	Q96AT9	228 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	GNB1L	Q9BYB4	327 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	ZNF430	Q9H8G1	570 aa	Predicted RBP	4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	NUP210	Q8TEM1	1887 aa	Predicted RBP	4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	hDV102S1	A0JD36	115 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	PEX7	O00628	323 aa		4.17	□□□□□ -1.74
SYNE2-223	ENST00000557005	CRYAB	P02511	175 aa	Known RBP	4.17	□□□□□ -1.74

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