RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 ZNF48Q96MX3 618 aaPredicted RBP9.07□□□□□ -0.96
SHMT2-216ENST00000554975 GPHA2Q96T91 129 aa9.07□□□□□ -0.96
SHMT2-216ENST00000554975 PLA2G2EQ9NZK7 142 aa9.07□□□□□ -0.96
SHMT2-216ENST00000554975 ZNF729A6NN14 1252 aaPredicted RBP9.06□□□□□ -0.96
SHMT2-216ENST00000554975 M0R036 132 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 NUPL2O15504 423 aaKnown RBP9.06□□□□□ -0.96
SHMT2-216ENST00000554975 TSPAN9O75954 239 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 S1PR2O95136 353 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 METTL15P1P0C7V9 234 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 SSTR5P35346 364 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 GLIPR1P48060 266 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 RAB5BP61020 215 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 PNRC1Q12796 327 aaPredicted RBP9.06□□□□□ -0.96
SHMT2-216ENST00000554975 PMS2P11Q13670 270 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 AARDQ4LEZ3 155 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 THNSL2Q86YJ6 484 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 C1orf87Q8N0U7 546 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 CD177Q8N6Q3 437 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 OR10P1Q8NGE3 313 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 OR52E5Q8NH55 327 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 DTD1Q8TEA8 209 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 ITLN1Q8WWA0 313 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 RAB1CQ92928 201 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 RAB39BQ96DA2 213 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 SDSLQ96GA7 329 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 P2RX4Q99571 388 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 WDR61Q9GZS3 305 aaKnown RBP9.06□□□□□ -0.96
SHMT2-216ENST00000554975 PARP12Q9H0J9 701 aaKnown RBP9.06□□□□□ -0.96
SHMT2-216ENST00000554975 RBKSQ9H477 322 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 CALYQ9NYX4 217 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 PRELID1Q9Y255 219 aa9.06□□□□□ -0.96
SHMT2-216ENST00000554975 IGKV1D-17A0A075B6S4 117 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 UBE2L5PA0A1B0GUS4 154 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 MARCH11A6NNE9 402 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 CEBPZOSA8MTT3 80 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 MPDU1O75352 247 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 RBMXL2O75526 392 aaKnown RBP9.05□□□□□ -0.96
SHMT2-216ENST00000554975 NXPH3O95157 252 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 MT-ND4LP03901 98 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 CD55P08174 381 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 THBS3P49746 956 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 RUNX1Q01196 453 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 ZNF816Q0VGE8 651 aaPredicted RBP9.05□□□□□ -0.96
SHMT2-216ENST00000554975 RNF212Q495C1 297 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 FBLN7Q53RD9 439 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 SPRNQ5BIV9 151 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 SPANXN5Q5MJ07 72 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 PRAMEF5Q5TYX0 476 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 TMEM88Q6PEY1 159 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 SPSB3Q6PJ21 355 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 C5orf24Q7Z6I8 188 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 MOGAT3Q86VF5 341 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 CBLN2Q8IUK8 224 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 ODF3L1Q8IXM7 274 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 TEX29Q8N6K0 151 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 ZNF709Q8N972 641 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 OR10A7Q8NGE5 316 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 UBALD1Q8TB05 177 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 MBD3L1Q8WWY6 194 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 R3HDM4Q96D70 268 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 ZNF251Q9BRH9 671 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 NIPSNAP3BQ9BS92 247 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 SCRT1Q9BWW7 348 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 C7orf69Q9H7B7 122 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 RPS10P5Q9NQ39 176 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 PSG11Q9UQ72 335 aa9.05□□□□□ -0.96
SHMT2-216ENST00000554975 A0A087WWC5 75 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 IGHV3-64DA0A0J9YX35 117 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 LOC102723971A0A1B0GUV8 181 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 B4DEV8 164 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 J3QLI3 93 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 SIGLEC5O15389 551 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 KRASP01116 189 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 LHBP01229 141 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 IGHV2-5P01817 119 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 RNASE1P07998 156 aaKnown RBP9.04□□□□□ -0.96
SHMT2-216ENST00000554975 BCL2P10415 239 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 NQO2P16083 231 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 DUTP33316 252 aaKnown RBP9.04□□□□□ -0.96
SHMT2-216ENST00000554975 G6PCP35575 357 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 EDDM3BP56851 147 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 KRTAP10-3P60369 221 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 MORN2Q502X0 79 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 KLF17Q5JT82 389 aaPredicted RBP9.04□□□□□ -0.96
SHMT2-216ENST00000554975 STUMQ69YW2 141 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 Q6ZRM9 215 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 SLC35E3Q7Z769 313 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 CENPVQ7Z7K6 275 aaPredicted RBP9.04□□□□□ -0.96
SHMT2-216ENST00000554975 SFT2D1Q8WV19 159 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 WFDC12Q8WWY7 111 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 S1PR3Q99500 378 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 ABHD14AQ9BUJ0 271 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 GGACTQ9BVM4 153 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 BIN3Q9NQY0 253 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 SIRT7Q9NRC8 400 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 GFOD1Q9NXC2 390 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 SOX21Q9Y651 276 aaPredicted RBP9.04□□□□□ -0.96
SHMT2-216ENST00000554975 PLXNB1O43157 2135 aa9.04□□□□□ -0.96
SHMT2-216ENST00000554975 CTXND1A0A1B0GTU2 59 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 C7orf77A4D0Y5 90 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms