RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 GSX1Q9H4S2 264 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-215ENST00000552823 PTPRBP23467 1997 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 KBTBD11-OT1A0A1B0GTJ5 212 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 NUDT19A8MXV4 375 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 E7EQL1 145 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 DVL1O14640 695 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 RAB29O14966 203 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 NDUFS7O75251 213 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 NDUFB4O95168 129 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 HPRT1P00492 218 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 WNT2P09544 360 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 TNFRSF1AP19438 455 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 CDC34P49427 236 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-215ENST00000552823 PSMB3P49720 205 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 LOXL3P58215 753 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 KRTCAP3Q53RY4 240 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 TMEM41BQ5BJD5 291 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 NHLRC2Q8NBF2 726 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 LFNGQ8NES3 379 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 OR4P4Q8NGL7 312 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 OR2T6Q8NHC8 308 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 ABHD5Q8WTS1 349 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 Q8WTZ3 238 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 FRZBQ92765 325 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 IL22RA2Q969J5 263 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 RITA1Q96K30 269 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 NPCDR1Q9BY65 106 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 ACTR3CQ9C0K3 210 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-215ENST00000552823 EGLN1Q9GZT9 426 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 NIT2Q9NQR4 276 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 HILPDAQ9Y5L2 63 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 OR51B2Q9Y5P1 312 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 LOC102723971A0A1B0GUV8 181 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 DUXBA0A1W2PPF3 345 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 NKX6-3A6NJ46 265 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 IFNL4K9M1U5 179 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 PPIHO43447 177 aaKnown RBP4.59□□□□□ -1.67
LIMA1-215ENST00000552823 OR7C2O60412 319 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 CEACAM4O75871 244 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 S100A9P06702 114 aaKnown RBP4.59□□□□□ -1.67
LIMA1-215ENST00000552823 ARF6P62330 175 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 PLGLAQ15195 96 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 FAM78BQ5VT40 261 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 TMEM14EPQ6UXP3 125 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 IDI2-AS1Q9NZ38 188 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 ONECUT1Q9UBC0 465 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 HSPB7Q9UBY9 170 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 PXMP4Q9Y6I8 212 aa4.59□□□□□ -1.67
LIMA1-215ENST00000552823 ACANP16112 2415 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 MTORP42345 2549 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 hADV38S2A0JD32 116 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 VSTM5A8MXK1 200 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 C11orf94C9JXX5 98 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 NPY1RP25929 384 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 CNTFRP26992 372 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 OR10J1P30954 320 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 CEACAM8P31997 349 aaPredicted RBP4.59□□□□□ -1.68
LIMA1-215ENST00000552823 TIMP3P35625 211 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 B2MP61769 119 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 HES1Q14469 280 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 TMEM200BQ69YZ2 307 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 OR9G1Q8NH87 305 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 CA5BP1Q8WTZ4 195 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 UHRF2Q96PU4 802 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 COMMD5Q9GZQ3 224 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 TPSG1Q9NRR2 321 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 TMEM106BQ9NUM4 274 aa4.59□□□□□ -1.68
LIMA1-215ENST00000552823 IGHV3OR16-8A0A075B7F1 116 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 TRAV5A0A0B4J249 113 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 IGHV3-35A0A0C4DH35 117 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 E7EUB6 86 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 J3QW42 95 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 IFNA1P01562 189 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 MT-ND4LP03901 98 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 CD3EP07766 207 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 OR5G3P0C626 314 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 ARL14EPLP0DKL9 152 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 CTRB1P17538 263 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 CASP6P55212 293 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 TCL1AP56279 114 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 RELBQ01201 579 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 CTRB2Q6GPI1 263 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 SPNS3Q6ZMD2 512 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 C16orf82Q7Z2V1 217 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 PNKDQ8N490 385 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 OR4S2Q8NH73 311 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 ZCCHC14Q8WYQ9 949 aaKnown RBP4.58□□□□□ -1.68
LIMA1-215ENST00000552823 RNASE6Q93091 150 aaKnown RBP4.58□□□□□ -1.68
LIMA1-215ENST00000552823 MISP3Q96FF7 219 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 ASCL2Q99929 193 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 FAM103A1Q9BTL3 118 aaKnown RBP4.58□□□□□ -1.68
LIMA1-215ENST00000552823 PLEKHA3Q9HB20 300 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 SEPSECSQ9HD40 501 aaKnown RBP4.58□□□□□ -1.68
LIMA1-215ENST00000552823 SERTAD4Q9NUC0 356 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 IL19Q9UHD0 177 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 JPT1Q9UK76 154 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 TRBV23-1A0A0A0MS06 115 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 TMEM238LA0A1B0GVL6 79 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 H7BYZ3 331 aa4.58□□□□□ -1.68
LIMA1-215ENST00000552823 SAA1P0DJI8 122 aaPredicted RBP4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms