RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 MCTS1Q9ULC4 181 aaKnown RBP3.18□□□□□ -1.9
LIMA1-210ENST00000552045 SLC22A13Q9Y226 551 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 HEY1Q9Y5J3 304 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 PXMP4Q9Y6I8 212 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 ERBINQ96RT1 1412 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 PIEZO1Q92508 2521 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 COL14A1Q05707 1796 aaKnown RBP3.17□□□□□ -1.9
LIMA1-210ENST00000552045 TRIOBPQ9H2D6 2365 aa3.17□□□□□ -1.9
LIMA1-210ENST00000552045 C19orf71A6NCJ1 209 aa3.17□□□□□ -1.9
LIMA1-210ENST00000552045 ATP5HO75947 161 aa3.17□□□□□ -1.9
LIMA1-210ENST00000552045 CCL3P10147 92 aa3.17□□□□□ -1.9
LIMA1-210ENST00000552045 SPCS3P61009 180 aa3.17□□□□□ -1.9
LIMA1-210ENST00000552045 HIST2H3PS2Q5TEC6 136 aa3.17□□□□□ -1.9
LIMA1-210ENST00000552045 SPOPLQ6IQ16 392 aa3.17□□□□□ -1.9
LIMA1-210ENST00000552045 CALHM3Q86XJ0 350 aa3.17□□□□□ -1.9
LIMA1-210ENST00000552045 TMEM86BQ8N661 226 aa3.17□□□□□ -1.9
LIMA1-210ENST00000552045 GPR119Q8TDV5 335 aa3.17□□□□□ -1.9
LIMA1-210ENST00000552045 SLC35B4Q969S0 331 aa3.17□□□□□ -1.9
LIMA1-210ENST00000552045 ZNF391Q9UJN7 358 aa3.17□□□□□ -1.9
LIMA1-210ENST00000552045 BCL9O00512 1426 aa3.17□□□□□ -1.9
LIMA1-210ENST00000552045 DSCAMO60469 2012 aa3.17□□□□□ -1.9
LIMA1-210ENST00000552045 COL4A4P53420 1690 aaPredicted RBP3.17□□□□□ -1.9
LIMA1-210ENST00000552045 PHRF1Q9P1Y6 1649 aaKnown RBP3.16□□□□□ -1.9
LIMA1-210ENST00000552045 A0A1W2PNM2 257 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 KPNA3O00505 521 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-210ENST00000552045 KRT75O95678 551 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 SOD1P00441 154 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 OR5G3P0C626 314 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 CRHBPP24387 322 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 COL8A2P25067 703 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 LPAR6P43657 344 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 IDH3GP51553 393 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-210ENST00000552045 RANP62826 216 aaKnown RBP3.16□□□□□ -1.9
LIMA1-210ENST00000552045 ZNF117Q03924 483 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 C1orf158Q8N1D5 194 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 UMODL1-AS1Q8N2C9 162 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 RNASE6Q93091 150 aaKnown RBP3.16□□□□□ -1.9
LIMA1-210ENST00000552045 C12orf43Q96C57 262 aaKnown RBP3.16□□□□□ -1.9
LIMA1-210ENST00000552045 GNPNAT1Q96EK6 184 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-210ENST00000552045 PECRQ9BY49 303 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 LCE3DQ9BYE3 92 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 MRPL16Q9NX20 251 aaKnown RBP3.16□□□□□ -1.9
LIMA1-210ENST00000552045 VPS29Q9UBQ0 182 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 COQ4Q9Y3A0 265 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 CHD8Q9HCK8 2581 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 VCANP13611 3396 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 LRRIQ1Q96JM4 1722 aa3.16□□□□□ -1.9
LIMA1-210ENST00000552045 IGHV3-73A0A0B4J1V6 119 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 OR4C45A6NMZ5 311 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 ALOX5APP20292 161 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 SERPINB10P48595 397 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 CCL7P80098 99 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 IFITM2Q01629 132 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 PMAIP1Q13794 54 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 FAM201AQ5SY85 155 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 ALKAL1Q6UXT8 129 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 DAND5Q8N907 189 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 LHFPL5Q8TAF8 219 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 RAB2BQ8WUD1 216 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 CAPZA3Q96KX2 299 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 PSTPIP2Q9H939 334 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-210ENST00000552045 KLK5Q9Y337 293 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-210ENST00000552045 EEA1Q15075 1411 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 NALCNQ8IZF0 1738 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 XRN1Q8IZH2 1706 aaKnown RBP3.15□□□□□ -1.91
LIMA1-210ENST00000552045 BAHCC1Q9P281 2608 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 CCDC141Q6ZP82 1450 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 LRRC37A3O60309 1634 aa3.15□□□□□ -1.91
LIMA1-210ENST00000552045 IGLV10-54A0A075B6I4 117 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 GRIFINA4D1Z8 144 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 CLDN24A6NM45 220 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 C17orf51A8MQB3 221 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 OR11H12B2RN74 326 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 COX7A2LO14548 114 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 UBE2L6O14933 153 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 TRAPPC3O43617 180 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 FAM228BP0C875 321 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 P0C880 135 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 TBPL1P62380 186 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 REEP5Q00765 189 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 LGALS9BQ3B8N2 356 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 LGALS9CQ6DKI2 356 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 ZNF322Q6U7Q0 402 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-210ENST00000552045 GPHB5Q86YW7 130 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 CLDN22Q8N7P3 220 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 OR11H2Q8NH07 326 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 RPS4Y2Q8TD47 263 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 ANKRD7Q92527 254 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 CXorf21Q9HAI6 301 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 ATG2BQ96BY7 2078 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 PAPPAQ13219 1627 aa3.14□□□□□ -1.91
LIMA1-210ENST00000552045 VIRMAQ69YN4 1812 aaKnown RBP3.14□□□□□ -1.91
LIMA1-210ENST00000552045 ARHGEF5Q12774 1597 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 IGHV1-69-2A0A0G2JMI3 117 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 A0A1B0GV50 99 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 EEF1E1-BLOC1S5C9J1V9 151 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 C9JCJ5 164 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 CHP2O43745 196 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 IFNA6P05013 189 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms