RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 PIGBOS1A0A0B4J2F0 54 aa9.04□□□□□ -0.96
CUX1-212ENST00000547394 COLCA2A8K830 154 aa9.04□□□□□ -0.96
CUX1-212ENST00000547394 SAA1P0DJI8 122 aaPredicted RBP9.04□□□□□ -0.96
CUX1-212ENST00000547394 CD1BP29016 333 aa9.04□□□□□ -0.96
CUX1-212ENST00000547394 VDAC2P45880 294 aaPredicted RBP9.04□□□□□ -0.96
CUX1-212ENST00000547394 UBE2G2P60604 165 aa9.04□□□□□ -0.96
CUX1-212ENST00000547394 SPCS3P61009 180 aa9.04□□□□□ -0.96
CUX1-212ENST00000547394 C19orf35Q6ZS72 473 aa9.04□□□□□ -0.96
CUX1-212ENST00000547394 ZNF429Q86V71 674 aa9.04□□□□□ -0.96
CUX1-212ENST00000547394 COMMD1Q8N668 190 aa9.04□□□□□ -0.96
CUX1-212ENST00000547394 RAB39BQ96DA2 213 aa9.04□□□□□ -0.96
CUX1-212ENST00000547394 POLQO75417 2590 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 CA2P00918 260 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 GATA2P23769 480 aaPredicted RBP9.03□□□□□ -0.96
CUX1-212ENST00000547394 COX7A1P24310 79 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 SP5Q6BEB4 398 aaPredicted RBP9.03□□□□□ -0.96
CUX1-212ENST00000547394 HIPK2Q9H2X6 1198 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 TPSG1Q9NRR2 321 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 OR51B2Q9Y5P1 312 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 FAM208BQ5VWN6 2430 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 EPG5Q9HCE0 2579 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 LOC102723971A0A1B0GUV8 181 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 A0A1W2PRD5 423 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 A0A1W2PRF3 423 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 A0A1W2PRM7 423 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 C15orf61A6NNL5 157 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 VSTM5A8MXK1 200 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 ENSAO43768 121 aaKnown RBP9.03□□□□□ -0.96
CUX1-212ENST00000547394 THBS3P49746 956 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 LGALS4P56470 323 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 ZNF709Q8N972 641 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 RAB24Q969Q5 203 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 PINX1Q96BK5 328 aaKnown RBP9.03□□□□□ -0.96
CUX1-212ENST00000547394 HARBI1Q96MB7 349 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 CIB3Q96Q77 187 aaPredicted RBP9.03□□□□□ -0.96
CUX1-212ENST00000547394 GAL3ST2Q9H3Q3 398 aa9.03□□□□□ -0.96
CUX1-212ENST00000547394 AURKAIP1Q9NWT8 199 aaPredicted RBP9.03□□□□□ -0.96
CUX1-212ENST00000547394 NDUFS7O75251 213 aa9.02□□□□□ -0.96
CUX1-212ENST00000547394 BCL2P10415 239 aa9.02□□□□□ -0.96
CUX1-212ENST00000547394 MEOX2P50222 304 aa9.02□□□□□ -0.96
CUX1-212ENST00000547394 DLK1P80370 383 aa9.02□□□□□ -0.96
CUX1-212ENST00000547394 TREML4Q6UXN2 200 aa9.02□□□□□ -0.96
CUX1-212ENST00000547394 HEPN1Q6WQI6 88 aa9.02□□□□□ -0.96
CUX1-212ENST00000547394 Q8N7P7 452 aa9.02□□□□□ -0.96
CUX1-212ENST00000547394 OR5T1Q8NG75 326 aa9.02□□□□□ -0.96
CUX1-212ENST00000547394 RPUSD4Q96CM3 377 aaKnown RBP9.02□□□□□ -0.96
CUX1-212ENST00000547394 PSMG3Q9BT73 122 aaPredicted RBP9.02□□□□□ -0.96
CUX1-212ENST00000547394 REG1AP05451 166 aa9.02□□□□□ -0.97
CUX1-212ENST00000547394 TAGLN2P37802 199 aaKnown RBP9.02□□□□□ -0.97
CUX1-212ENST00000547394 ARSJQ5FYB0 599 aaPredicted RBP9.02□□□□□ -0.97
CUX1-212ENST00000547394 ZNF506Q5JVG8 444 aa9.02□□□□□ -0.97
CUX1-212ENST00000547394 TCTEX1D1Q8N7M0 179 aa9.02□□□□□ -0.97
CUX1-212ENST00000547394 DIRC2Q96SL1 478 aa9.02□□□□□ -0.97
CUX1-212ENST00000547394 SMCO4Q9NRQ5 59 aa9.02□□□□□ -0.97
CUX1-212ENST00000547394 A0A1W2PPR1 153 aa9.02□□□□□ -0.97
CUX1-212ENST00000547394 J3QR06 171 aa9.02□□□□□ -0.97
CUX1-212ENST00000547394 SOD3P08294 240 aa9.02□□□□□ -0.97
CUX1-212ENST00000547394 UCNP55089 124 aa9.02□□□□□ -0.97
CUX1-212ENST00000547394 SNRPEP62304 92 aaKnown RBP9.02□□□□□ -0.97
CUX1-212ENST00000547394 SPATA31B1PQ5VZV4 182 aa9.02□□□□□ -0.97
CUX1-212ENST00000547394 CORO2AQ92828 525 aa9.02□□□□□ -0.97
CUX1-212ENST00000547394 HIST1H2BAQ96A08 127 aa9.02□□□□□ -0.97
CUX1-212ENST00000547394 C1orf159Q96HA4 380 aa9.02□□□□□ -0.97
CUX1-212ENST00000547394 MGST2Q99735 147 aa9.02□□□□□ -0.97
CUX1-212ENST00000547394 B9A039 149 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 RBFOX2O43251 390 aaKnown RBP eCLIP9.01□□□□□ -0.976e-7■■■□□ 18.3
CUX1-212ENST00000547394 ACTL6BO94805 426 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 SNRPCP09234 159 aaKnown RBP9.01□□□□□ -0.97
CUX1-212ENST00000547394 CNTFRP26992 372 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 SERF2P84101 59 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 CLEC12BQ2HXU8 276 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 ST6GALNAC3Q8NDV1 305 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 SLC24A4Q8NFF2 622 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 OR51G1Q8NGK1 321 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 TMEM14BQ9NUH8 114 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 LRRK2Q5S007 2527 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 H0YJW9 148 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 TNFRSF13BO14836 293 aaPredicted RBP9.01□□□□□ -0.97
CUX1-212ENST00000547394 PAGE4O60829 102 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 HBE1P02100 147 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 NPY1RP25929 384 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 HSPE1P61604 102 aaKnown RBP9.01□□□□□ -0.97
CUX1-212ENST00000547394 RTL8BQ17RB0 113 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 FAM90A2PQ658T7 463 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 SSX3Q99909 188 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 SEBOXQ9HB31 216 aaPredicted RBP9.01□□□□□ -0.97
CUX1-212ENST00000547394 ENY2Q9NPA8 101 aa9.01□□□□□ -0.97
CUX1-212ENST00000547394 YIF1AO95070 293 aa9□□□□□ -0.97
CUX1-212ENST00000547394 CD24P25063 80 aa9□□□□□ -0.97
CUX1-212ENST00000547394 GNB2P62879 340 aa9□□□□□ -0.97
CUX1-212ENST00000547394 ZNF672Q499Z4 452 aaPredicted RBP9□□□□□ -0.97
CUX1-212ENST00000547394 LHFPL4Q7Z7J7 247 aa9□□□□□ -0.97
CUX1-212ENST00000547394 C11orf42Q8N5U0 333 aa9□□□□□ -0.97
CUX1-212ENST00000547394 SIRT7Q9NRC8 400 aa9□□□□□ -0.97
CUX1-212ENST00000547394 IGHV3-21A0A0B4J1V1 117 aa9□□□□□ -0.97
CUX1-212ENST00000547394 TEX50A0A1B0GTY4 177 aa9□□□□□ -0.97
CUX1-212ENST00000547394 BTBD17A6NE02 478 aa9□□□□□ -0.97
CUX1-212ENST00000547394 SLC25A17O43808 307 aa9□□□□□ -0.97
CUX1-212ENST00000547394 IGFBP2P18065 325 aa9□□□□□ -0.97
CUX1-212ENST00000547394 MDKP21741 143 aaPredicted RBP9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms