RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 SLC9A3R2Q15599 337 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 CARTPTQ16568 116 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 CT45A1Q5HYN5 189 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 CCDC144NLQ6NUI1 221 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 ZNF833PQ6ZTB9 187 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 LGI3Q8N145 548 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 BEND2Q8NDZ0 799 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 CT45A3Q8NHU0 189 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 LSM10Q969L4 123 aaKnown RBP6.85□□□□□ -1.31
VPS29-203ENST00000546588 ST6GALNAC6Q969X2 333 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 ABHD14BQ96IU4 210 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 HSD17B10Q99714 261 aaKnown RBP6.85□□□□□ -1.31
VPS29-203ENST00000546588 FAM110AQ9BQ89 295 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 SSBP3Q9BWW4 388 aaPredicted RBP6.85□□□□□ -1.31
VPS29-203ENST00000546588 BEX2Q9BXY8 128 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 OR2D2Q9H210 308 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 BEX1Q9HBH7 125 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 NIT2Q9NQR4 276 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 BEX4Q9NWD9 120 aaPredicted RBP6.85□□□□□ -1.31
VPS29-203ENST00000546588 MYO18BQ8IUG5 2567 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 MALRD1Q5VYJ5 2156 aa6.85□□□□□ -1.31
VPS29-203ENST00000546588 HMSDA8MTL9 139 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 RAB29O14966 203 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 PPIHO43447 177 aaKnown RBP6.84□□□□□ -1.31
VPS29-203ENST00000546588 FGF2P09038 288 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 OR8U9P0C7N5 309 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 CCL3L1P16619 93 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 VDAC1P21796 283 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 DUTP33316 252 aaKnown RBP6.84□□□□□ -1.31
VPS29-203ENST00000546588 GNB2P62879 340 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 CYCSP99999 105 aaKnown RBP6.84□□□□□ -1.31
VPS29-203ENST00000546588 CATR1Q13166 79 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 POU2AF1Q16633 256 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 ZNF585BQ52M93 769 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 PHLDA2Q53GA4 152 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 PDLIM3Q53GG5 364 aaPredicted RBP6.84□□□□□ -1.31
VPS29-203ENST00000546588 OR2B11Q5JQS5 317 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 AVPI1Q5T686 147 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 DCAF12L2Q5VW00 463 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 TMEM65Q6PI78 240 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 ZNF525Q8N782 197 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 OR8U1Q8NH10 309 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 CLDND2Q8NHS1 167 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 RBPMSQ93062 196 aaKnown RBP6.84□□□□□ -1.31
VPS29-203ENST00000546588 HYLS1Q96M11 299 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 BPESC1Q9GZL8 116 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 TMEM133Q9H2Q1 129 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 YAE1D1Q9NRH1 226 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 GNG12Q9UBI6 72 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 PSG11Q9UQ72 335 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 KPTNQ9Y664 436 aa6.84□□□□□ -1.31
VPS29-203ENST00000546588 TET2Q6N021 2002 aaPredicted RBP6.84□□□□□ -1.31
VPS29-203ENST00000546588 SAA2-SAA4A0A096LPE2 208 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 LINC00862A6NCI5 91 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 LINC00473A8K010 186 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 ODF3BA8MYP8 253 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 H7C2Y5 167 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 J3QR06 171 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 PHF1O43189 567 aaPredicted RBP6.83□□□□□ -1.32
VPS29-203ENST00000546588 PITX3O75364 302 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 SAP30O75446 220 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 IGKV1-39P01597 117 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 IGKV1D-39P04432 117 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 SAA2P0DJI9 122 aaPredicted RBP6.83□□□□□ -1.32
VPS29-203ENST00000546588 SLC25A4P12235 298 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 SLC25A16P16260 332 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 KIR2DS2P43631 304 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 FAM3BP58499 235 aaPredicted RBP6.83□□□□□ -1.32
VPS29-203ENST00000546588 FGL1Q08830 312 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 BSXQ3C1V8 233 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 AKIRIN2Q53H80 203 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 UTF1Q5T230 341 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 NCR3LG1Q68D85 454 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 FAM53AQ6NSI3 398 aaPredicted RBP6.83□□□□□ -1.32
VPS29-203ENST00000546588 NOXA1Q86UR1 476 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 FAM219AQ8IW50 185 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 Q8N7P7 452 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 OR11H6Q8NGC7 330 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 OR9G1Q8NH87 305 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 RFESDQ8TAC1 157 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 UBALD1Q8TB05 177 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 ADTRPQ96IZ2 230 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 COMMD9Q9P000 198 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 TBL2Q9Y4P3 447 aaKnown RBP6.83□□□□□ -1.32
VPS29-203ENST00000546588 AUP1Q9Y679 476 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 VPS13CQ709C8 3753 aa6.83□□□□□ -1.32
VPS29-203ENST00000546588 TRAV14DV4A0A0A6YYC5 116 aa6.82□□□□□ -1.32
VPS29-203ENST00000546588 IGHV2-26A0A0B4J1V2 119 aa6.82□□□□□ -1.32
VPS29-203ENST00000546588 IGHV3-43A0A0B4J1X8 118 aa6.82□□□□□ -1.32
VPS29-203ENST00000546588 IGHV2-70DA0A0C4DH43 119 aa6.82□□□□□ -1.32
VPS29-203ENST00000546588 A1L4Q6 167 aa6.82□□□□□ -1.32
VPS29-203ENST00000546588 FBLL1A6NHQ2 334 aaKnown RBP6.82□□□□□ -1.32
VPS29-203ENST00000546588 GOSR2O14653 212 aa6.82□□□□□ -1.32
VPS29-203ENST00000546588 HSD17B6O14756 317 aa6.82□□□□□ -1.32
VPS29-203ENST00000546588 DLEU1O43261 78 aa6.82□□□□□ -1.32
VPS29-203ENST00000546588 ENSAO43768 121 aaKnown RBP6.82□□□□□ -1.32
VPS29-203ENST00000546588 IL6RP08887 468 aaPredicted RBP6.82□□□□□ -1.32
VPS29-203ENST00000546588 PPIAL4GP0DN37 164 aa6.82□□□□□ -1.32
VPS29-203ENST00000546588 IGHV3-43DP0DP04 118 aa6.82□□□□□ -1.32
VPS29-203ENST00000546588 MMP9P14780 707 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms