RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 CTSZQ9UBR2 303 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 FBXO7Q9Y3I1 522 aa5.05□□□□□ -1.6
SYNE1-239ENST00000545694 LRRK2Q5S007 2527 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 ZFYVE26Q68DK2 2539 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 PPIAL4CA0A0B4J2A2 164 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 OOSP1A8MZH6 123 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 C17orf112F2Z3M2 114 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 H7C2Y5 167 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 SLC31A2O15432 143 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 CST7O76096 145 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 KBTBD11O94819 623 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 CRYZL1O95825 349 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 IFNA17P01571 189 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 SOD3P08294 240 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 PPIAL4GP0DN37 164 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 M6PRP20645 277 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 MAS1LP35410 378 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 CEACAM3P40198 252 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 GPR6P46095 362 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-239ENST00000545694 COMPP49747 757 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-239ENST00000545694 DVL1P1P54792 670 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-239ENST00000545694 OR2B8PP59922 312 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 SLC38A11Q08AI6 406 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 CLINT1Q14677 625 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 PEA15Q15121 130 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 VWC2Q2TAL6 325 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 VMA21Q3ZAQ7 101 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 SPANXN5Q5MJ07 72 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 OR4A47Q6IF82 309 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 Q6ZRG5 221 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 TGIF2LYQ8IUE0 185 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 TGIF2LXQ8IUE1 241 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 ZNF525Q8N782 197 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 LINC01356Q8N9X3 169 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 ZNF383Q8NA42 475 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 HSD17B11Q8NBQ5 300 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 OR13D1Q8NGV5 346 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 ST6GALNAC6Q969X2 333 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 CLEC7AQ9BXN2 247 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 KRTAP17-1Q9BYP8 105 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 UNKLQ9H9P5 680 aaKnown RBP5.04□□□□□ -1.6
SYNE1-239ENST00000545694 UQCC1Q9NVA1 299 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 WASHC3Q9Y3C0 194 aa5.04□□□□□ -1.6
SYNE1-239ENST00000545694 FAM208BQ5VWN6 2430 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 SPG11Q96JI7 2443 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 IGHV2-26A0A0B4J1V2 119 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 A0A1W2PN81 502 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 TMEM218A2RU14 115 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 H0YJW9 148 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 OVOL3O00110 214 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 NDUFS8O00217 210 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 UPK2O00526 184 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 MMP23AO75900 390 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 IGLV1-47P01700 117 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 CD5P06127 495 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 OR9G9P0C7N8 305 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 METTL15P1P0C7V9 234 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 IAPPP10997 89 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 CCL3L1P16619 93 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 PRTN3P24158 256 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 CHRNA7P36544 502 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 VDAC2P45880 294 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-239ENST00000545694 GNG10P50151 68 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 SUB1P53999 127 aaKnown RBP eCLIP5.03□□□□□ -1.6
SYNE1-239ENST00000545694 DLK1P80370 383 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 PRCDQ00LT1 54 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 RAB31Q13636 194 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 HLA-DRB5Q30154 266 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 OR2B11Q5JQS5 317 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 C10orf91Q5T1B1 145 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 FAM53AQ6NSI3 398 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-239ENST00000545694 C11orf42Q8N5U0 333 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 TMEM217Q8N7C4 229 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 ZNF709Q8N972 641 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 TEX45Q8NA69 505 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 OR11H6Q8NGC7 330 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 OR1L8Q8NGR8 309 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 TMEM167AQ8TBQ9 72 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 TAF15Q92804 592 aaKnown RBP eCLIP5.03□□□□□ -1.6
SYNE1-239ENST00000545694 HARBI1Q96MB7 349 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 NABP2Q9BQ15 211 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 SSBP3Q9BWW4 388 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-239ENST00000545694 QTRT1Q9BXR0 403 aaKnown RBP5.03□□□□□ -1.6
SYNE1-239ENST00000545694 SEC11CQ9BY50 192 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 WDR61Q9GZS3 305 aaKnown RBP5.03□□□□□ -1.6
SYNE1-239ENST00000545694 HEYLQ9NQ87 328 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-239ENST00000545694 AP5S1Q9NUS5 200 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 KIAA1456Q9P272 454 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 TCF19Q9Y242 345 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 OR51B2Q9Y5P1 312 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 KPTNQ9Y664 436 aa5.03□□□□□ -1.6
SYNE1-239ENST00000545694 ZNF462Q96JM2 2506 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 SMG1Q96Q15 3661 aaKnown RBP5.02□□□□□ -1.61
SYNE1-239ENST00000545694 LOC105371242A0A075B767 164 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 PMS2P5A8MQ11 134 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 BUB1B-PAK6H3BSN5 160 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 ENSAO43768 121 aaKnown RBP5.02□□□□□ -1.61
SYNE1-239ENST00000545694 FCN3O75636 299 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 IFNA10P01566 189 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 SNCAP37840 140 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms