RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 OR9G9P0C7N8 305 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 DEFA4P12838 97 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 MEOX2P50222 304 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 SERF2P84101 59 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 RPP25LQ8N5L8 163 aaKnown RBP11.68□□□□□ -0.54
VPS33A-209ENST00000544349 OR8B3Q8NGG8 313 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 DDB2Q92466 427 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 NEIL1Q96FI4 390 aaPredicted RBP11.68□□□□□ -0.54
VPS33A-209ENST00000544349 OR8B2Q96RD0 313 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 SLC25A22Q9H936 323 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 URGCP-MRPS24S4R325 110 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 RBFOX2O43251 390 aaKnown RBP eCLIP11.68□□□□□ -0.54
VPS33A-209ENST00000544349 HPRT1P00492 218 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 IGHV2-5P01817 119 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 ELOBQ15370 118 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 H2BFWTQ7Z2G1 175 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 C11orf42Q8N5U0 333 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 OR10G4Q8NGN3 311 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 S1PR3Q99500 378 aa11.68□□□□□ -0.54
VPS33A-209ENST00000544349 QTRT1Q9BXR0 403 aaKnown RBP11.68□□□□□ -0.54
VPS33A-209ENST00000544349 HRNRQ86YZ3 2850 aaPredicted RBP11.67□□□□□ -0.54
VPS33A-209ENST00000544349 CFAP46Q8IYW2 2715 aa11.67□□□□□ -0.54
VPS33A-209ENST00000544349 A0A087WWC5 75 aa11.67□□□□□ -0.54
VPS33A-209ENST00000544349 NDUFS7O75251 213 aa11.67□□□□□ -0.54
VPS33A-209ENST00000544349 FGF7P21781 194 aa11.67□□□□□ -0.54
VPS33A-209ENST00000544349 KIR2DS2P43631 304 aa11.67□□□□□ -0.54
VPS33A-209ENST00000544349 FABP9Q0Z7S8 132 aa11.67□□□□□ -0.54
VPS33A-209ENST00000544349 WDR25Q64LD2 544 aaPredicted RBP11.67□□□□□ -0.54
VPS33A-209ENST00000544349 SLC35E3Q7Z769 313 aa11.67□□□□□ -0.54
VPS33A-209ENST00000544349 TMEM147Q9BVK8 224 aa11.67□□□□□ -0.54
VPS33A-209ENST00000544349 TMPRSS5Q9H3S3 457 aa11.67□□□□□ -0.54
VPS33A-209ENST00000544349 ZNRD1Q9P1U0 126 aa11.67□□□□□ -0.54
VPS33A-209ENST00000544349 TGIF2-C20orf24A0A0A6YYL0 155 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 CEBPZOSA8MTT3 80 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 S100A6P06703 90 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 NQO2P16083 231 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 THBS3P49746 956 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 R3HDM4Q96D70 268 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 ADTRPQ96IZ2 230 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 TIMM9Q9Y5J7 89 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 A0A087X0M5 115 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 A0A1B0GX30 115 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 C15orf62A8K5M9 175 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 RBMXL2O75526 392 aaKnown RBP11.66□□□□□ -0.54
VPS33A-209ENST00000544349 IGHV1-8P0DP01 117 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 EFNA4P52798 201 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 SSX9Q7RTT3 188 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 VKORC1L1Q8N0U8 176 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 C8orf31Q8N9H6 132 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 ZNF383Q8NA42 475 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 C8orf46Q8TAG6 207 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 ZNF596Q8TC21 504 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 GATAD1Q8WUU5 269 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 SSX3Q99909 188 aa11.66□□□□□ -0.54
VPS33A-209ENST00000544349 PATZ1Q9HBE1 687 aaKnown RBP11.66□□□□□ -0.54
VPS33A-209ENST00000544349 J3QR06 171 aa11.65□□□□□ -0.54
VPS33A-209ENST00000544349 RPS10P46783 165 aaKnown RBP11.65□□□□□ -0.54
VPS33A-209ENST00000544349 SLC16A13Q7RTY0 426 aa11.65□□□□□ -0.54
VPS33A-209ENST00000544349 CENPVQ7Z7K6 275 aaPredicted RBP11.65□□□□□ -0.54
VPS33A-209ENST00000544349 IQCF2Q8IXL9 164 aa11.65□□□□□ -0.54
VPS33A-209ENST00000544349 LINC00311Q8N616 119 aa11.65□□□□□ -0.54
VPS33A-209ENST00000544349 LHX4Q969G2 390 aa11.65□□□□□ -0.54
VPS33A-209ENST00000544349 PINX1Q96BK5 328 aaKnown RBP11.65□□□□□ -0.54
VPS33A-209ENST00000544349 NPCDR1Q9BY65 106 aa11.65□□□□□ -0.54
VPS33A-209ENST00000544349 METTL1Q9UBP6 276 aaKnown RBP11.65□□□□□ -0.54
VPS33A-209ENST00000544349 MALRD1Q5VYJ5 2156 aa11.65□□□□□ -0.54
VPS33A-209ENST00000544349 PPIAL4CA0A0B4J2A2 164 aa11.65□□□□□ -0.55
VPS33A-209ENST00000544349 OVOL3O00110 214 aa11.65□□□□□ -0.55
VPS33A-209ENST00000544349 CT45A6P0DMU7 189 aa11.65□□□□□ -0.55
VPS33A-209ENST00000544349 CT45A5P0DMU8 189 aa11.65□□□□□ -0.55
VPS33A-209ENST00000544349 CT45A7P0DMV0 189 aa11.65□□□□□ -0.55
VPS33A-209ENST00000544349 PPIAL4GP0DN37 164 aa11.65□□□□□ -0.55
VPS33A-209ENST00000544349 CD81P60033 236 aa11.65□□□□□ -0.55
VPS33A-209ENST00000544349 ZNF833PQ6ZTB9 187 aa11.65□□□□□ -0.55
VPS33A-209ENST00000544349 OR4S2Q8NH73 311 aa11.65□□□□□ -0.55
VPS33A-209ENST00000544349 SPOCK3Q9BQ16 436 aa11.65□□□□□ -0.55
VPS33A-209ENST00000544349 GPR6P46095 362 aaPredicted RBP11.64□□□□□ -0.55
VPS33A-209ENST00000544349 VWC2Q2TAL6 325 aa11.64□□□□□ -0.55
VPS33A-209ENST00000544349 FFAR4Q5NUL3 377 aa11.64□□□□□ -0.55
VPS33A-209ENST00000544349 C1QL4Q86Z23 238 aa11.64□□□□□ -0.55
VPS33A-209ENST00000544349 Q8N7P7 452 aa11.64□□□□□ -0.55
VPS33A-209ENST00000544349 OR10P1Q8NGE3 313 aa11.64□□□□□ -0.55
VPS33A-209ENST00000544349 TMEM133Q9H2Q1 129 aa11.64□□□□□ -0.55
VPS33A-209ENST00000544349 VAX2Q9UIW0 290 aa11.64□□□□□ -0.55
VPS33A-209ENST00000544349 LRBAP50851 2863 aa11.64□□□□□ -0.55
VPS33A-209ENST00000544349 TRAV3A0A0B4J244 114 aa11.63□□□□□ -0.55
VPS33A-209ENST00000544349 GNB2P62879 340 aa11.63□□□□□ -0.55
VPS33A-209ENST00000544349 ABHD12Q8N2K0 398 aa11.63□□□□□ -0.55
VPS33A-209ENST00000544349 LY6G5BQ8NDX9 201 aa11.63□□□□□ -0.55
VPS33A-209ENST00000544349 OR9G1Q8NH87 305 aa11.63□□□□□ -0.55
VPS33A-209ENST00000544349 SLC39A9Q9NUM3 307 aa11.63□□□□□ -0.55
VPS33A-209ENST00000544349 MDKP21741 143 aaPredicted RBP11.63□□□□□ -0.55
VPS33A-209ENST00000544349 ATP6V1FQ16864 119 aa11.63□□□□□ -0.55
VPS33A-209ENST00000544349 OR10G9Q8NGN4 311 aa11.63□□□□□ -0.55
VPS33A-209ENST00000544349 OR10G7Q8NGN6 311 aa11.63□□□□□ -0.55
VPS33A-209ENST00000544349 OR10X1Q8NGY0 326 aa11.63□□□□□ -0.55
VPS33A-209ENST00000544349 IGFBPL1Q8WX77 278 aa11.63□□□□□ -0.55
VPS33A-209ENST00000544349 SDF2L1Q9HCN8 221 aa11.63□□□□□ -0.55
VPS33A-209ENST00000544349 CTXND1A0A1B0GTU2 59 aa11.62□□□□□ -0.55
VPS33A-209ENST00000544349 FAM90A9PA6NNJ1 464 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms