RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	OR5B3	Q8NH48	314 aa		9.45	□□□□□ -0.9
DDB1-223	ENST00000543658	GRPEL2	Q8TAA5	225 aa		9.45	□□□□□ -0.9
DDB1-223	ENST00000543658	ARPC1A	Q92747	370 aa		9.45	□□□□□ -0.9
DDB1-223	ENST00000543658	C2orf50	Q96LR7	162 aa		9.45	□□□□□ -0.9
DDB1-223	ENST00000543658	FYTTD1	Q96QD9	318 aa	Known RBP	9.45	□□□□□ -0.9
DDB1-223	ENST00000543658	HINT2	Q9BX68	163 aa		9.45	□□□□□ -0.9
DDB1-223	ENST00000543658	PARP11	Q9NR21	331 aa		9.45	□□□□□ -0.9
DDB1-223	ENST00000543658	COA4	Q9NYJ1	87 aa		9.45	□□□□□ -0.9
DDB1-223	ENST00000543658	GSKIP	Q9P0R6	139 aa		9.45	□□□□□ -0.9
DDB1-223	ENST00000543658	FOXA2	Q9Y261	457 aa	Predicted RBP	9.45	□□□□□ -0.9
DDB1-223	ENST00000543658	FN1	P02751	2386 aa	Known RBP	9.45	□□□□□ -0.9
DDB1-223	ENST00000543658	SVEP1	Q4LDE5	3571 aa		9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	TNC	P24821	2201 aa		9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	MTOR	P42345	2549 aa		9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	TRAV3	A0A0B4J244	114 aa		9.44	□□□□□ -0.9
DDB1-223	ENST00000543658		A0A1W2PN81	502 aa		9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	FAM181B	A6NEQ2	426 aa		9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	SH2D7	A6NKC9	451 aa	Predicted RBP	9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	MED6	O75586	246 aa		9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	NXPH3	O95157	252 aa		9.44	□□□□□ -0.9
DDB1-223	ENST00000543658		P0C879	139 aa		9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	CHRNA7	P36544	502 aa		9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	HOXA1	P49639	335 aa	Predicted RBP	9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	CYCS	P99999	105 aa	Known RBP	9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	FCN2	Q15485	313 aa		9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	ZNF562	Q6V9R5	426 aa		9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	ZNF429	Q86V71	674 aa		9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	SRSF12	Q8WXF0	261 aa	Known RBP	9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	QTRT1	Q9BXR0	403 aa	Known RBP	9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	ZNF257	Q9Y2Q1	563 aa		9.44	□□□□□ -0.9
DDB1-223	ENST00000543658	IGHV7-81	A0A0B4J1V7	117 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	CEBPZOS	A8MTT3	80 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	FAM90A26	D6RGX4	464 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	ST8SIA3	O43173	380 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	SIX6	O95475	246 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	OPN1MW	P04001	364 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	IL6R	P08887	468 aa	Predicted RBP	9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	OPN1MW2	P0DN77	364 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	OPN1MW3	P0DN78	364 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	NKX2-1	P43699	371 aa	Predicted RBP	9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	VDAC2	P45880	294 aa	Predicted RBP	9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	COMP	P49747	757 aa	Predicted RBP	9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	CX3CL1	P78423	397 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	TMEM267	Q0VDI3	215 aa	Predicted RBP	9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	PJVK	Q0ZLH3	352 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	OR2T6	Q8NHC8	308 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	OR10C1	Q96KK4	312 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	HSPB9	Q9BQS6	159 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	PLEKHA3	Q9HB20	300 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	ZFP57	Q9NU63	452 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	TMEM14B	Q9NUH8	114 aa		9.43	□□□□□ -0.9
DDB1-223	ENST00000543658	ANK3	Q12955	4377 aa	Known RBP	9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	HMX3	A6NHT5	357 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	MPTX1	A8MV57	137 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	AP4M1	O00189	453 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	FCN1	O00602	326 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	ATP6V0E1	O15342	81 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	IGHG2	P01859	326 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	TRAPPC2	P0DI81	140 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	TRAPPC2B	P0DI82	140 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	PET100	P0DJ07	73 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	S100A10	P60903	97 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	SPCS3	P61009	180 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	HSPE1	P61604	102 aa	Known RBP	9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	BLCAP	P62952	87 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	PRCD	Q00LT1	54 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	ECSCR	Q19T08	205 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	C2orf68	Q2NKX9	166 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658		Q6ZRM9	215 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	OR52E5	Q8NH55	327 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	ASB13	Q8WXK3	278 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	NMES1	Q9C002	83 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	HIPK2	Q9H2X6	1198 aa		9.42	□□□□□ -0.9
DDB1-223	ENST00000543658	MXRA5	Q9NR99	2828 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	TEX50	A0A1B0GTY4	177 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658		L7N2F9	121 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	RLN2	P04090	185 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	AMY1A	P04745	511 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	MYOD1	P15172	320 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	PVALB	P20472	110 aa	Predicted RBP	9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	VAMP2	P63027	116 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	ERH	P84090	104 aa	Known RBP	9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	TNFRSF9	Q07011	255 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	SPINK9	Q5DT21	86 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	C10orf55	Q5SWW7	151 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	UNQ5815/PRO19632	Q6UWF5	114 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	OR11H7	Q8NGC8	314 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	OR4D5	Q8NGN0	318 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	TMEM68	Q96MH6	324 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	FAM103A1	Q9BTL3	118 aa	Known RBP	9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	GON7	Q9BXV9	100 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	ZNF436	Q9C0F3	470 aa	Predicted RBP	9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	ZNF702P	Q9H963	129 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	LSM5	Q9Y4Y9	91 aa	Known RBP	9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	ZFHX3	Q15911	3703 aa		9.41	□□□□□ -0.9
DDB1-223	ENST00000543658	MSGN1	A6NI15	193 aa		9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	CYB5B	O43169	146 aa		9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	PITX3	O75364	302 aa		9.4	□□□□□ -0.9

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms