RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 LCN15Q6UWW0 184 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 CYP2G1PQ6ZSU1 146 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 MS4A5Q9H3V2 200 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 CHODLQ9H9P2 273 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 NAT8Q9UHE5 227 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 PPIAL4AQ9Y536 164 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 ARL2-SNX15V9GYD0 113 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 SVILO95425 2214 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 MED19A0JLT2 244 aaPredicted RBP8.11□□□□□ -1.11
SS18-205ENST00000542420 HIST1H2BKO60814 126 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 HIST1H2BJP06899 126 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 HIST1H2BOP23527 126 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 HIST1H2BBP33778 126 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 ZNF137PP52743 207 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 HIST1H2BDP58876 126 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 HIST1H2BCP62807 126 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 BSPH1Q075Z2 132 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 HIST2H2BEQ16778 126 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.11□□□□□ -1.11
SS18-205ENST00000542420 WFDC8Q8IUA0 241 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 ZNF664Q8N3J9 261 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 Q8N7P7 452 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 HIST1H2BHQ93079 126 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 HIST1H2BNQ99877 126 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 HIST1H2BMQ99879 126 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 SNHG12Q9BXW3 62 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 NPVFQ9HCQ7 196 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 ENY2Q9NPA8 101 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 HEYLQ9NQ87 328 aaPredicted RBP8.11□□□□□ -1.11
SS18-205ENST00000542420 FRYLO94915 3013 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 DOCK11Q5JSL3 2073 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 A0A1B0GV50 99 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 KBTBD11O94819 623 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 VENTXO95231 258 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 IGKV1D-33P01593 117 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 IGKV1-33P01594 117 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 CDC34P49427 236 aaPredicted RBP8.1□□□□□ -1.11
SS18-205ENST00000542420 HOXA4Q00056 320 aaPredicted RBP8.1□□□□□ -1.11
SS18-205ENST00000542420 USF2Q15853 346 aaPredicted RBP8.1□□□□□ -1.11
SS18-205ENST00000542420 LTC4SQ16873 150 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 OR4A47Q6IF82 309 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 SSX7Q7RTT5 188 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 OR5B3Q8NH48 314 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 CCL13Q99616 98 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 PCGF1Q9BSM1 259 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 C20orf24Q9BUV8 137 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 SAP30LQ9HAJ7 183 aa8.1□□□□□ -1.11
SS18-205ENST00000542420 SLC25A10Q9UBX3 287 aaPredicted RBP8.1□□□□□ -1.11
SS18-205ENST00000542420 LSM4Q9Y4Z0 139 aaKnown RBP8.1□□□□□ -1.11
SS18-205ENST00000542420 URB1O60287 2271 aaKnown RBP8.1□□□□□ -1.11
SS18-205ENST00000542420 DIDO1Q9BTC0 2240 aaKnown RBP8.09□□□□□ -1.11
SS18-205ENST00000542420 ZFP92A6NM28 416 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 B9A039 149 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 F6UZH7 168 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 UPK2O00526 184 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 DLEU1O43261 78 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 APOA2P02652 100 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 GYPAP02724 150 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 OPN1MWP04001 364 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 NPSP0C0P6 89 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 OPN1MW2P0DN77 364 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 OPN1MW3P0DN78 364 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 GNG10P50151 68 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 ELLP55199 621 aaPredicted RBP8.09□□□□□ -1.11
SS18-205ENST00000542420 PRCDQ00LT1 54 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 TLE1Q04724 770 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 RAB31Q13636 194 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 WDR25Q64LD2 544 aaPredicted RBP8.09□□□□□ -1.11
SS18-205ENST00000542420 C22orf34Q6ZV56 151 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 ZGRF1Q86YA3 2104 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 TNFRSF14Q92956 283 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 ZNF714Q96N38 554 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 TMEM204Q9BSN7 226 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 CLDN34H7C241 214 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 PDE6DO43924 150 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 NPY1RP25929 384 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 TFF3Q07654 80 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 GAGE1Q13065 139 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 TMEM177Q53S58 311 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 LRRC10Q5BKY1 277 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 LYG1Q8N1E2 194 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 PNKDQ8N490 385 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 SLC24A4Q8NFF2 622 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 RNASE6Q93091 150 aaKnown RBP8.09□□□□□ -1.11
SS18-205ENST00000542420 TMEM186Q96B77 213 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 SNRNP40Q96DI7 357 aaKnown RBP8.09□□□□□ -1.11
SS18-205ENST00000542420 BTF3L4Q96K17 158 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 NOL4LQ96MY1 436 aaPredicted RBP8.09□□□□□ -1.11
SS18-205ENST00000542420 TMEM208Q9BTX3 173 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 C19orf24Q9BVV8 132 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 SLC35D1Q9NTN3 355 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 TMEM106BQ9NUM4 274 aa8.09□□□□□ -1.11
SS18-205ENST00000542420 CADP27708 2225 aa8.09□□□□□ -1.12
SS18-205ENST00000542420 TRBV24-1A0A075B6N3 115 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 ELOA3CA0A087WX78 387 aaPredicted RBP8.08□□□□□ -1.12
SS18-205ENST00000542420 NDUFB3O43676 98 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 APOBEC3AP31941 199 aaPredicted RBP8.08□□□□□ -1.12
SS18-205ENST00000542420 RPL29P47914 159 aaKnown RBP8.08□□□□□ -1.12
SS18-205ENST00000542420 ELOBQ15370 118 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 BSXQ3C1V8 233 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms