RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 LSM10Q969L4 123 aaKnown RBP7.41□□□□□ -1.22
DDX55-208ENST00000541259 RRNAD1Q96FB5 475 aaKnown RBP7.41□□□□□ -1.22
DDX55-208ENST00000541259 SSBP4Q9BWG4 385 aaPredicted RBP7.41□□□□□ -1.22
DDX55-208ENST00000541259 MED28Q9H204 178 aa7.41□□□□□ -1.22
DDX55-208ENST00000541259 RAB18Q9NP72 206 aa7.41□□□□□ -1.22
DDX55-208ENST00000541259 BET1LQ9NYM9 111 aa7.41□□□□□ -1.22
DDX55-208ENST00000541259 KIAA1456Q9P272 454 aa7.41□□□□□ -1.22
DDX55-208ENST00000541259 MOB4Q9Y3A3 225 aa7.41□□□□□ -1.22
DDX55-208ENST00000541259 TMED3Q9Y3Q3 217 aa7.41□□□□□ -1.22
DDX55-208ENST00000541259 POMT1Q9Y6A1 747 aa7.41□□□□□ -1.22
DDX55-208ENST00000541259 E7EUB6 86 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 ATG12O94817 140 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 NXPH3O95157 252 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 IFNA21P01568 189 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 OPN1MWP04001 364 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 SULT1A3P0DMM9 295 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 SULT1A4P0DMN0 295 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 OPN1MW2P0DN77 364 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 OPN1MW3P0DN78 364 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 HILS1P60008 231 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 RRAS2P62070 204 aaPredicted RBP7.4□□□□□ -1.22
DDX55-208ENST00000541259 GNB1P62873 340 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 PPP1R27Q86WC6 154 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 OR11H7Q8NGC8 314 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 OR8H1Q8NGG4 311 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 CHAC2Q8WUX2 184 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 RASL11BQ9BPW5 248 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 HSPB9Q9BQS6 159 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 AIFM2Q9BRQ8 373 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 QTRT1Q9BXR0 403 aaKnown RBP7.4□□□□□ -1.22
DDX55-208ENST00000541259 WNT10AQ9GZT5 417 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 C1RLQ9NZP8 487 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 MGAT4CQ9UBM8 478 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 CACNG5Q9UF02 275 aa7.4□□□□□ -1.22
DDX55-208ENST00000541259 JMJD1CQ15652 2540 aa7.4□□□□□ -1.23
DDX55-208ENST00000541259 SETD2Q9BYW2 2564 aaPredicted RBP7.39□□□□□ -1.23
DDX55-208ENST00000541259 TEX50A0A1B0GTY4 177 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 A0A1B0GU03 582 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 A0A1B0GW64 132 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 C5orf51A6NDU8 294 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 FGF16O43320 207 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 PITX3O75364 302 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 CA2P00918 260 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 HLA-GP17693 338 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 H2BFSP57053 126 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 RPL8P62917 257 aaKnown RBP7.39□□□□□ -1.23
DDX55-208ENST00000541259 UBA52P62987 128 aaKnown RBP7.39□□□□□ -1.23
DDX55-208ENST00000541259 SMCO1Q147U7 214 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 TNXAQ16473 311 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 IAH1Q2TAA2 248 aaPredicted RBP7.39□□□□□ -1.23
DDX55-208ENST00000541259 SPINK9Q5DT21 86 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 C9orf152Q5JTZ5 239 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 C10orf55Q5SWW7 151 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 C11orf87Q6NUJ2 197 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 C16orf82Q7Z2V1 217 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 OR5M8Q8NGP6 311 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 OR4A16Q8NH70 328 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 OR4A5Q8NH83 315 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 VSTM2AQ8TAG5 236 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 GSKIPQ9P0R6 139 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 OR51B2Q9Y5P1 312 aa7.39□□□□□ -1.23
DDX55-208ENST00000541259 C2CD3Q4AC94 2353 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 IGHV7-81A0A0B4J1V7 117 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 HMX3A6NHT5 357 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 CGB1A6NKQ9 187 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 C15orf61A6NNL5 157 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 CLDN34H7C241 214 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 ST8SIA3O43173 380 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 RBMXL2O75526 392 aaKnown RBP7.38□□□□□ -1.23
DDX55-208ENST00000541259 SNAPC5O75971 98 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 HLA-DRB1P01911 266 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 RNASE1P07998 156 aaKnown RBP7.38□□□□□ -1.23
DDX55-208ENST00000541259 EGR2P11161 476 aaPredicted RBP7.38□□□□□ -1.23
DDX55-208ENST00000541259 BCAP31P51572 246 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 CX3CL1P78423 397 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 NDPQ00604 133 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 CXorf66Q5JRM2 361 aaPredicted RBP7.38□□□□□ -1.23
DDX55-208ENST00000541259 GSG1LQ6UXU4 331 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 MMD2Q8IY49 270 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 ZBTB8BQ8NAP8 495 aaPredicted RBP7.38□□□□□ -1.23
DDX55-208ENST00000541259 OR4D5Q8NGN0 318 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 OR1S1Q8NH92 325 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 C2orf50Q96LR7 162 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 FAM103A1Q9BTL3 118 aaKnown RBP7.38□□□□□ -1.23
DDX55-208ENST00000541259 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.38□□□□□ -1.23
DDX55-208ENST00000541259 TMEM14BQ9NUH8 114 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 PRNDQ9UKY0 176 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 FOXA2Q9Y261 457 aaPredicted RBP7.38□□□□□ -1.23
DDX55-208ENST00000541259 FBXO7Q9Y3I1 522 aa7.38□□□□□ -1.23
DDX55-208ENST00000541259 M0QZK8 103 aa7.37□□□□□ -1.23
DDX55-208ENST00000541259 TCF21O43680 179 aa7.37□□□□□ -1.23
DDX55-208ENST00000541259 CNIH1O95406 144 aa7.37□□□□□ -1.23
DDX55-208ENST00000541259 APELAP0DMC3 54 aa7.37□□□□□ -1.23
DDX55-208ENST00000541259 SLC25A6P12236 298 aa7.37□□□□□ -1.23
DDX55-208ENST00000541259 COMPP49747 757 aaPredicted RBP7.37□□□□□ -1.23
DDX55-208ENST00000541259 HSPE1P61604 102 aaKnown RBP7.37□□□□□ -1.23
DDX55-208ENST00000541259 IL15RAQ13261 267 aa7.37□□□□□ -1.23
DDX55-208ENST00000541259 FXYD3Q14802 87 aa7.37□□□□□ -1.23
DDX55-208ENST00000541259 TMEM95Q3KNT9 176 aa7.37□□□□□ -1.23
DDX55-208ENST00000541259 AARDQ4LEZ3 155 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms