RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MGST2Q99735 147 aa13.88□□□□□ -0.19
USP28-208ENST00000540438 ACTR3CQ9C0K3 210 aaPredicted RBP13.88□□□□□ -0.19
USP28-208ENST00000540438 A0A1B0GW64 132 aa13.88□□□□□ -0.19
USP28-208ENST00000540438 GFRA3O60609 400 aa13.88□□□□□ -0.19
USP28-208ENST00000540438 PLAUP00749 431 aa13.88□□□□□ -0.19
USP28-208ENST00000540438 PPP1R35Q8TAP8 253 aa13.88□□□□□ -0.19
USP28-208ENST00000540438 ZCCHC14Q8WYQ9 949 aaKnown RBP13.88□□□□□ -0.19
USP28-208ENST00000540438 HIPK2Q9H2X6 1198 aa13.88□□□□□ -0.19
USP28-208ENST00000540438 KBTBD11-OT1A0A1B0GTJ5 212 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 A0A1B0GUS0 222 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 E7EUB6 86 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 C1QTNF9P0C862 333 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 IGFBP2P18065 325 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 CHRNB4P30926 498 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 RPL23P62829 140 aaKnown RBP13.87□□□□□ -0.19
USP28-208ENST00000540438 HTD2P86397 168 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 TMEM241Q24JQ0 296 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 Q8N7P7 452 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 TMEM37Q8WXS4 190 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 MIOXQ9UGB7 285 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 UTP20O75691 2785 aaKnown RBP13.87□□□□□ -0.19
USP28-208ENST00000540438 CTXND1A0A1B0GTU2 59 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 MKRN2OSH3BPM6 223 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 UBE2CO00762 179 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 PRRG2O14669 202 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 IGHV2-5P01817 119 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 IRF2P14316 349 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 FABP4P15090 132 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 ARSJQ5FYB0 599 aaPredicted RBP13.87□□□□□ -0.19
USP28-208ENST00000540438 SCNM1Q9BWG6 230 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 TUBA4BQ9H853 241 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 PXMP4Q9Y6I8 212 aa13.87□□□□□ -0.19
USP28-208ENST00000540438 FAM90A26D6RGX4 464 aa13.86□□□□□ -0.19
USP28-208ENST00000540438 SPINK4O60575 86 aa13.86□□□□□ -0.19
USP28-208ENST00000540438 LHBP01229 141 aa13.86□□□□□ -0.19
USP28-208ENST00000540438 ADIPOQQ15848 244 aa13.86□□□□□ -0.19
USP28-208ENST00000540438 BSXQ3C1V8 233 aa13.86□□□□□ -0.19
USP28-208ENST00000540438 SLC35E3Q7Z769 313 aa13.86□□□□□ -0.19
USP28-208ENST00000540438 LINC01560Q8TB33 94 aa13.86□□□□□ -0.19
USP28-208ENST00000540438 JPT1Q9UK76 154 aa13.86□□□□□ -0.19
USP28-208ENST00000540438 C16orf97H3BN30 126 aa13.86□□□□□ -0.19
USP28-208ENST00000540438 CLDN34H7C241 214 aa13.86□□□□□ -0.19
USP28-208ENST00000540438 OR10J4P0C629 311 aa13.86□□□□□ -0.19
USP28-208ENST00000540438 S100PP25815 95 aa13.86□□□□□ -0.19
USP28-208ENST00000540438 RPL31P62899 125 aaKnown RBP13.86□□□□□ -0.19
USP28-208ENST00000540438 Q8NA96 180 aa13.86□□□□□ -0.19
USP28-208ENST00000540438 FAM57AQ8TBR7 257 aa13.86□□□□□ -0.19
USP28-208ENST00000540438 YPEL1O60688 119 aa13.85□□□□□ -0.19
USP28-208ENST00000540438 THBDP07204 575 aa13.85□□□□□ -0.19
USP28-208ENST00000540438 C1orf159Q96HA4 380 aa13.85□□□□□ -0.19
USP28-208ENST00000540438 YPEL2Q96QA6 119 aa13.85□□□□□ -0.19
USP28-208ENST00000540438 HIVEP3Q5T1R4 2406 aa13.85□□□□□ -0.19
USP28-208ENST00000540438 TRAV1-1A0A0B4J248 108 aa13.85□□□□□ -0.19
USP28-208ENST00000540438 MRPL20Q9BYC9 149 aaKnown RBP13.85□□□□□ -0.19
USP28-208ENST00000540438 IFNA1P01562 189 aa13.85□□□□□ -0.19
USP28-208ENST00000540438 C1orf87Q8N0U7 546 aa13.85□□□□□ -0.19
USP28-208ENST00000540438 RITA1Q96K30 269 aa13.85□□□□□ -0.19
USP28-208ENST00000540438 SAP30LQ9HAJ7 183 aa13.85□□□□□ -0.19
USP28-208ENST00000540438 SLC25A10Q9UBX3 287 aaPredicted RBP13.85□□□□□ -0.19
USP28-208ENST00000540438 ZFYVE26Q68DK2 2539 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 TRGV8A0A0C4DH27 118 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 CT45A6P0DMU7 189 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 CT45A5P0DMU8 189 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 CT45A7P0DMV0 189 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 GNB1P62873 340 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 C9orf152Q5JTZ5 239 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 OR13D1Q8NGV5 346 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 ITPR1Q14643 2758 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 IGLV3-9A0A075B6K5 115 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 TRAV20A0A0B4J274 112 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 SCO2A0A1W2PP80 73 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 FAM90A27PA6NNH2 459 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 ENSAO43768 121 aaKnown RBP13.84□□□□□ -0.19
USP28-208ENST00000540438 VDAC2P45880 294 aaPredicted RBP13.84□□□□□ -0.19
USP28-208ENST00000540438 SPCS3P61009 180 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 STUMQ69YW2 141 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 TMEM108Q6UXF1 575 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 OR4P4Q8NGL7 312 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 CIB3Q96Q77 187 aaPredicted RBP13.84□□□□□ -0.19
USP28-208ENST00000540438 SLC35D1Q9NTN3 355 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 IDI2-AS1Q9NZ38 188 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 OR51B2Q9Y5P1 312 aa13.84□□□□□ -0.19
USP28-208ENST00000540438 H7BYZ3 331 aa13.83□□□□□ -0.19
USP28-208ENST00000540438 B2MP61769 119 aa13.83□□□□□ -0.19
USP28-208ENST00000540438 DPPA3Q6W0C5 159 aa13.83□□□□□ -0.19
USP28-208ENST00000540438 ACY3Q96HD9 319 aa13.83□□□□□ -0.19
USP28-208ENST00000540438 GGTLC1Q9BX51 225 aa13.83□□□□□ -0.19
USP28-208ENST00000540438 GSN-AS1Q9NRJ2 163 aa13.83□□□□□ -0.19
USP28-208ENST00000540438 J3QR06 171 aa13.83□□□□□ -0.2
USP28-208ENST00000540438 CRYABP02511 175 aaKnown RBP13.83□□□□□ -0.2
USP28-208ENST00000540438 FABP1P07148 127 aa13.83□□□□□ -0.2
USP28-208ENST00000540438 NPY1RP25929 384 aa13.83□□□□□ -0.2
USP28-208ENST00000540438 SSBP2P81877 361 aaPredicted RBP13.83□□□□□ -0.2
USP28-208ENST00000540438 PYY3Q5JQD4 70 aa13.83□□□□□ -0.2
USP28-208ENST00000540438 OR4S2Q8NH73 311 aa13.83□□□□□ -0.2
USP28-208ENST00000540438 OR9G1Q8NH87 305 aa13.83□□□□□ -0.2
USP28-208ENST00000540438 ENY2Q9NPA8 101 aa13.83□□□□□ -0.2
USP28-208ENST00000540438 WDR83OSQ9Y284 106 aa13.83□□□□□ -0.2
USP28-208ENST00000540438 A0A1W2PRD5 423 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 A0A1W2PRF3 423 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms