RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 C12orf77C9JDV5 145 aa15.39■□□□□ 0.05
SFSWAP-203ENST00000535236 SLC25A34Q6PIV7 304 aa15.39■□□□□ 0.05
SFSWAP-203ENST00000535236 CD200R1LQ6Q8B3 271 aa15.39■□□□□ 0.05
SFSWAP-203ENST00000535236 FOCADQ5VW36 1801 aa15.39■□□□□ 0.05
SFSWAP-203ENST00000535236 TRAV24A0A0B4J272 114 aa15.39■□□□□ 0.05
SFSWAP-203ENST00000535236 M0R381 172 aa15.39■□□□□ 0.05
SFSWAP-203ENST00000535236 HTN3P15516 51 aa15.39■□□□□ 0.05
SFSWAP-203ENST00000535236 ZNF708P17019 499 aa15.39■□□□□ 0.05
SFSWAP-203ENST00000535236 TEX45Q8NA69 505 aa15.39■□□□□ 0.05
SFSWAP-203ENST00000535236 C21orf62Q9NYP8 219 aa15.39■□□□□ 0.05
SFSWAP-203ENST00000535236 GPR183P32249 361 aa15.38■□□□□ 0.05
SFSWAP-203ENST00000535236 KIAA1644Q3SXP7 199 aa15.38■□□□□ 0.05
SFSWAP-203ENST00000535236 HIST1H2BAQ96A08 127 aa15.38■□□□□ 0.05
SFSWAP-203ENST00000535236 PEMTQ9UBM1 199 aa15.38■□□□□ 0.05
SFSWAP-203ENST00000535236 NMBP08949 121 aa15.38■□□□□ 0.05
SFSWAP-203ENST00000535236 RAMP1O60894 148 aa15.38■□□□□ 0.05
SFSWAP-203ENST00000535236 CENPWQ5EE01 88 aa15.38■□□□□ 0.05
SFSWAP-203ENST00000535236 POC1AQ8NBT0 407 aa15.38■□□□□ 0.05
SFSWAP-203ENST00000535236 SFRP2Q96HF1 295 aa15.38■□□□□ 0.05
SFSWAP-203ENST00000535236 TRBV9A0A0B4J1U6 114 aa15.37■□□□□ 0.05
SFSWAP-203ENST00000535236 HBBP68871 147 aa15.37■□□□□ 0.05
SFSWAP-203ENST00000535236 CLEC19AQ6UXS0 136 aa15.37■□□□□ 0.05
SFSWAP-203ENST00000535236 SEMA5BQ9P283 1151 aa15.37■□□□□ 0.05
SFSWAP-203ENST00000535236 C2orf68Q2NKX9 166 aa15.37■□□□□ 0.05
SFSWAP-203ENST00000535236 LINC01587Q99440 93 aa15.37■□□□□ 0.05
SFSWAP-203ENST00000535236 CDKN1AP38936 164 aa15.37■□□□□ 0.05
SFSWAP-203ENST00000535236 MEF2CQ06413 473 aaPredicted RBP15.37■□□□□ 0.05
SFSWAP-203ENST00000535236 MRPL13Q9BYD1 178 aaKnown RBP15.37■□□□□ 0.05
SFSWAP-203ENST00000535236 KBTBD11-OT1A0A1B0GTJ5 212 aa15.37■□□□□ 0.05
SFSWAP-203ENST00000535236 TMEM170BQ5T4T1 132 aa15.36■□□□□ 0.05
SFSWAP-203ENST00000535236 BEX4Q9NWD9 120 aaPredicted RBP15.36■□□□□ 0.05
SFSWAP-203ENST00000535236 UQCR10Q9UDW1 63 aa15.36■□□□□ 0.05
SFSWAP-203ENST00000535236 UNC13CQ8NB66 2214 aa15.36■□□□□ 0.05
SFSWAP-203ENST00000535236 EMP1P54849 157 aa15.36■□□□□ 0.05
SFSWAP-203ENST00000535236 PLP1P60201 277 aa15.36■□□□□ 0.05
SFSWAP-203ENST00000535236 WDR82Q6UXN9 313 aa15.36■□□□□ 0.05
SFSWAP-203ENST00000535236 ZIC4Q8N9L1 334 aa15.36■□□□□ 0.05
SFSWAP-203ENST00000535236 NBEAP1P0C6P0 100 aa15.36■□□□□ 0.05
SFSWAP-203ENST00000535236 IGHV1-2P23083 117 aa15.36■□□□□ 0.05
SFSWAP-203ENST00000535236 CACNG7P62955 275 aa15.36■□□□□ 0.05
SFSWAP-203ENST00000535236 IFITM3Q01628 133 aa15.36■□□□□ 0.05
SFSWAP-203ENST00000535236 DANCRP0C864 163 aa15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 CDX1P47902 265 aaPredicted RBP15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 PUSL1Q8N0Z8 303 aaKnown RBP15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 JMJD8Q96S16 334 aa15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 PSMG3Q9BT73 122 aaPredicted RBP15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 MIA3Q5JRA6 1907 aa15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 OR13A1Q8NGR1 328 aa15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 RNASE6Q93091 150 aaKnown RBP15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 MARVELD3Q96A59 401 aa15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 C2orf88Q9BSF0 95 aa15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 A0A0G2JMM0 328 aa15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 A0A1W2PPB8 328 aa15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 A0A1W2PRS3 328 aa15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 KIR3DP1A8MWS1 328 aa15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 TMEM136Q6ZRR5 245 aa15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 C17orf100A8MU93 164 aa15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 NPFFR1Q9GZQ6 430 aa15.35■□□□□ 0.05
SFSWAP-203ENST00000535236 TRGV2A0A075B6R0 118 aa15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 NRN1LQ496H8 165 aa15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 PRELID3AQ96N28 172 aa15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 MRPL20Q9BYC9 149 aaKnown RBP15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 VDAC2P45880 294 aaPredicted RBP15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 BIVMQ86UB2 503 aa15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 IGHV3-11P01762 117 aa15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 COLCA1Q6ZS62 124 aa15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 NPCDR1Q9BY65 106 aa15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 TMEM160Q9NX00 188 aa15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 SIPA1L3O60292 1781 aaPredicted RBP15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 CXorf65A6NEN9 183 aa15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 OR11H12B2RN74 326 aa15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 GPX4P36969 197 aaPredicted RBP15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 OR11H1Q8NG94 326 aa15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 OR11H2Q8NH07 326 aa15.34■□□□□ 0.05
SFSWAP-203ENST00000535236 GGACTQ9BVM4 153 aa15.33■□□□□ 0.05
SFSWAP-203ENST00000535236 LINC00312Q9Y6C7 94 aa15.33■□□□□ 0.05
SFSWAP-203ENST00000535236 FAM90A1Q86YD7 464 aa15.33■□□□□ 0.04
SFSWAP-203ENST00000535236 FBLIM1Q8WUP2 373 aa15.33■□□□□ 0.04
SFSWAP-203ENST00000535236 PLSCR2Q9NRY7 297 aa15.33■□□□□ 0.04
SFSWAP-203ENST00000535236 THSD7AQ9UPZ6 1657 aa15.33■□□□□ 0.04
SFSWAP-203ENST00000535236 RNASE4P34096 147 aaKnown RBP15.33■□□□□ 0.04
SFSWAP-203ENST00000535236 ZNF385CQ66K41 422 aaPredicted RBP15.33■□□□□ 0.04
SFSWAP-203ENST00000535236 C9orf106Q8NAJ2 232 aa15.33■□□□□ 0.04
SFSWAP-203ENST00000535236 IGFBP2P18065 325 aa15.33■□□□□ 0.04
SFSWAP-203ENST00000535236 PSG7Q13046 419 aa15.33■□□□□ 0.04
SFSWAP-203ENST00000535236 REC114Q7Z4M0 266 aa15.33■□□□□ 0.04
SFSWAP-203ENST00000535236 WDYHV1Q96HA8 205 aa15.33■□□□□ 0.04
SFSWAP-203ENST00000535236 AKIRIN1Q9H9L7 192 aaPredicted RBP15.33■□□□□ 0.04
SFSWAP-203ENST00000535236 H2BFSP57053 126 aa15.33■□□□□ 0.04
SFSWAP-203ENST00000535236 C1QTNF5Q9BXJ0 243 aa15.32■□□□□ 0.04
SFSWAP-203ENST00000535236 MYO16Q9Y6X6 1858 aa15.32■□□□□ 0.04
SFSWAP-203ENST00000535236 C17orf98A8MV24 154 aa15.32■□□□□ 0.04
SFSWAP-203ENST00000535236 TMEM250H0YL14 139 aa15.32■□□□□ 0.04
SFSWAP-203ENST00000535236 SIGLEC5O15389 551 aa15.32■□□□□ 0.04
SFSWAP-203ENST00000535236 SDF2L1Q9HCN8 221 aa15.32■□□□□ 0.04
SFSWAP-203ENST00000535236 TDRD15B5MCY1 1934 aaKnown RBP15.32■□□□□ 0.04
SFSWAP-203ENST00000535236 C1QL2Q7Z5L3 287 aa15.32■□□□□ 0.04
SFSWAP-203ENST00000535236 DOCK5Q9H7D0 1870 aa15.32■□□□□ 0.04
SFSWAP-203ENST00000535236 IGHV3OR16-8A0A075B7F1 116 aa15.32■□□□□ 0.04
SFSWAP-203ENST00000535236 H3BRM9 83 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms