RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 RAMP3O60896 148 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 CNIH1O95406 144 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 IFNA7P01567 189 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 CD74P04233 296 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 CD3DP04234 171 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 UCP3P55916 312 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 TAS2R19P59542 299 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 GNB1P62873 340 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 TMEM65Q6PI78 240 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 UNQ5815/PRO19632Q6UWF5 114 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 C8orf86Q6ZUL3 223 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 CMTM1Q8IZ96 169 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 PUSL1Q8N0Z8 303 aaKnown RBP11.73□□□□□ -0.53
CPSF1-208ENST00000532560 ARRDC1Q8N5I2 433 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 TMEM229BQ8NBD8 167 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 LFNGQ8NES3 379 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 OR51H1Q8NH63 302 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 CD300LFQ8TDQ1 290 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 C4orf3Q8WVX3 66 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 TMEM68Q96MH6 324 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 TINAGL1Q9GZM7 467 aaPredicted RBP11.73□□□□□ -0.53
CPSF1-208ENST00000532560 KLK15Q9H2R5 256 aa11.73□□□□□ -0.53
CPSF1-208ENST00000532560 PGLYRP1O75594 196 aaPredicted RBP11.72□□□□□ -0.53
CPSF1-208ENST00000532560 KBTBD11O94819 623 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 OR2A4O95047 310 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 HPRT1P00492 218 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 HRASP01112 189 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 RLN1P04808 185 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 IFNA6P05013 189 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 RAB9AP51151 201 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 KIAA0141Q14154 515 aaPredicted RBP11.72□□□□□ -0.53
CPSF1-208ENST00000532560 LPCAT3Q6P1A2 487 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 MMD2Q8IY49 270 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 SLC38A6Q8IZM9 456 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 VKORC1L1Q8N0U8 176 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 WFDC9Q8NEX5 89 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 SRSF12Q8WXF0 261 aaKnown RBP11.72□□□□□ -0.53
CPSF1-208ENST00000532560 RHOVQ96L33 236 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 UBE2E2Q96LR5 201 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 OR2A7Q96R45 310 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 SLC25A21Q9BQT8 299 aaPredicted RBP11.72□□□□□ -0.53
CPSF1-208ENST00000532560 AIFM2Q9BRQ8 373 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 RSRP1Q9BUV0 290 aa11.72□□□□□ -0.53
CPSF1-208ENST00000532560 ZNF430Q9H8G1 570 aaPredicted RBP11.72□□□□□ -0.53
CPSF1-208ENST00000532560 H3BUA1 57 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 CXCL3P19876 107 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 MYCNOSP40205 109 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 HTR2BP41595 481 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 TAS2R31P59538 309 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 TNXAQ16473 311 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 POU2AF1Q16633 256 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 THOC7Q6I9Y2 204 aaKnown RBP11.71□□□□□ -0.53
CPSF1-208ENST00000532560 LHFPL1Q86WI0 220 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 LINC00482Q8N8I6 264 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 ZNF491Q8N8L2 437 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 UXS1Q8NBZ7 420 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 TMEM167AQ8TBQ9 72 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 P2RX4Q99571 388 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 PLEKHA2Q9HB19 425 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 COMMD9Q9P000 198 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 VSIG4Q9Y279 399 aa11.71□□□□□ -0.53
CPSF1-208ENST00000532560 TNCP24821 2201 aa11.71□□□□□ -0.54
CPSF1-208ENST00000532560 ACTL6BO94805 426 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 RAB3DO95716 219 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 NQO2P16083 231 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 CD33P20138 364 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 F2RP25116 425 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 S100GP29377 79 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 MAS1LP35410 378 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 RUNX1Q01196 453 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 MEF2DQ14814 521 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 PHLDA2Q53GA4 152 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 SAMD5Q5TGI4 173 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 ASPHD1Q5U4P2 390 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 STEAP1BQ6NZ63 245 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 TEX261Q6UWH6 196 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 MRPL41Q8IXM3 137 aaKnown RBP11.7□□□□□ -0.54
CPSF1-208ENST00000532560 OR4D10Q8NGI6 311 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 OR2T35Q8NGX2 323 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 OR4A5Q8NH83 315 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 RAX2Q96IS3 184 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 GNB4Q9HAV0 340 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 BET1LQ9NYM9 111 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 MGAT4CQ9UBM8 478 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 U3KQ87 197 aa11.7□□□□□ -0.54
CPSF1-208ENST00000532560 LINC00862A6NCI5 91 aa11.69□□□□□ -0.54
CPSF1-208ENST00000532560 SMLR1H3BR10 107 aa11.69□□□□□ -0.54
CPSF1-208ENST00000532560 CCL24O00175 119 aa11.69□□□□□ -0.54
CPSF1-208ENST00000532560 S1PR2O95136 353 aa11.69□□□□□ -0.54
CPSF1-208ENST00000532560 BRI3O95415 125 aa11.69□□□□□ -0.54
CPSF1-208ENST00000532560 OR4A47Q6IF82 309 aa11.69□□□□□ -0.54
CPSF1-208ENST00000532560 SSX9Q7RTT3 188 aa11.69□□□□□ -0.54
CPSF1-208ENST00000532560 OR4C16Q8NGL9 310 aa11.69□□□□□ -0.54
CPSF1-208ENST00000532560 PHB2Q99623 299 aa11.69□□□□□ -0.54
CPSF1-208ENST00000532560 SPIN2AQ99865 258 aa11.69□□□□□ -0.54
CPSF1-208ENST00000532560 SPIN2BQ9BPZ2 258 aa11.69□□□□□ -0.54
CPSF1-208ENST00000532560 SLC2A9Q9NRM0 540 aa11.69□□□□□ -0.54
CPSF1-208ENST00000532560 FAM212BQ9NTI7 297 aaPredicted RBP11.69□□□□□ -0.54
CPSF1-208ENST00000532560 MSGN1A6NI15 193 aa11.68□□□□□ -0.54
CPSF1-208ENST00000532560 HMSDA8MTL9 139 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms