RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 FAM24AA6NFZ4 105 aa17.07■□□□□ 0.32
VPS28-212ENST00000530836 JTBO76095 146 aa17.07■□□□□ 0.32
VPS28-212ENST00000530836 TPT1P13693 172 aaKnown RBP17.07■□□□□ 0.32
VPS28-212ENST00000530836 HABP2Q14520 560 aaPredicted RBP17.07■□□□□ 0.32
VPS28-212ENST00000530836 LURAP1LQ8IV03 231 aa17.07■□□□□ 0.32
VPS28-212ENST00000530836 UBQLN2Q9UHD9 624 aa17.07■□□□□ 0.32
VPS28-212ENST00000530836 CEBPZOSA8MTT3 80 aa17.07■□□□□ 0.32
VPS28-212ENST00000530836 KBTBD11O94819 623 aa17.07■□□□□ 0.32
VPS28-212ENST00000530836 OR2B8PP59922 312 aa17.07■□□□□ 0.32
VPS28-212ENST00000530836 HSPE1P61604 102 aaKnown RBP17.07■□□□□ 0.32
VPS28-212ENST00000530836 RPP30P78346 268 aaKnown RBP17.07■□□□□ 0.32
VPS28-212ENST00000530836 ST8SIA2Q92186 375 aa17.07■□□□□ 0.32
VPS28-212ENST00000530836 MALSU1Q96EH3 234 aa17.07■□□□□ 0.32
VPS28-212ENST00000530836 TSNAXQ99598 290 aaKnown RBP17.07■□□□□ 0.32
VPS28-212ENST00000530836 FBXL17Q9UF56 701 aa17.07■□□□□ 0.32
VPS28-212ENST00000530836 HIVEP2P31629 2446 aa17.06■□□□□ 0.32
VPS28-212ENST00000530836 IAPPP10997 89 aa17.06■□□□□ 0.32
VPS28-212ENST00000530836 SULT1A1P50225 295 aa17.06■□□□□ 0.32
VPS28-212ENST00000530836 TEX45Q8NA69 505 aa17.06■□□□□ 0.32
VPS28-212ENST00000530836 OR5B3Q8NH48 314 aa17.06■□□□□ 0.32
VPS28-212ENST00000530836 TMEM167AQ8TBQ9 72 aa17.06■□□□□ 0.32
VPS28-212ENST00000530836 HIPK2Q9H2X6 1198 aa17.06■□□□□ 0.32
VPS28-212ENST00000530836 CYTL1Q9NRR1 136 aa17.06■□□□□ 0.32
VPS28-212ENST00000530836 BORCS7-ASMTA0A0B4J1R7 106 aa17.05■□□□□ 0.32
VPS28-212ENST00000530836 TRAV3A0A0B4J244 114 aa17.05■□□□□ 0.32
VPS28-212ENST00000530836 IGSF23A1L1A6 192 aa17.05■□□□□ 0.32
VPS28-212ENST00000530836 SPDEFO95238 335 aa17.05■□□□□ 0.32
VPS28-212ENST00000530836 NHLH2Q02577 135 aa17.05■□□□□ 0.32
VPS28-212ENST00000530836 EXOSC2Q13868 293 aaKnown RBP17.05■□□□□ 0.32
VPS28-212ENST00000530836 OR51B2Q9Y5P1 312 aa17.05■□□□□ 0.32
VPS28-212ENST00000530836 TIMM23O14925 209 aa17.04■□□□□ 0.32
VPS28-212ENST00000530836 IGLV2-23P01705 113 aa17.04■□□□□ 0.32
VPS28-212ENST00000530836 LDLRAD2Q5SZI1 272 aa17.04■□□□□ 0.32
VPS28-212ENST00000530836 LHFPL4Q7Z7J7 247 aa17.04■□□□□ 0.32
VPS28-212ENST00000530836 BAP18Q8IXM2 172 aa17.04■□□□□ 0.32
VPS28-212ENST00000530836 TMEM160Q9NX00 188 aa17.04■□□□□ 0.32
VPS28-212ENST00000530836 TCF19Q9Y242 345 aa17.04■□□□□ 0.32
VPS28-212ENST00000530836 HILPDAQ9Y5L2 63 aa17.04■□□□□ 0.32
VPS28-212ENST00000530836 AUP1Q9Y679 476 aa17.04■□□□□ 0.32
VPS28-212ENST00000530836 IGHV3-72A0A0B4J1Y9 119 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 CFDP00746 253 aaPredicted RBP17.03■□□□□ 0.32
VPS28-212ENST00000530836 RPL8P62917 257 aaKnown RBP17.03■□□□□ 0.32
VPS28-212ENST00000530836 HBG1P69891 147 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 HBG2P69892 147 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 ZNF266Q14584 549 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 EIF5AL1Q6IS14 154 aaKnown RBP17.03■□□□□ 0.32
VPS28-212ENST00000530836 PDZD9Q8IXQ8 264 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 STPG2Q8N412 459 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 UBAC2Q8NBM4 344 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 SCARB1Q8WTV0 552 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 ENY2Q9NPA8 101 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 STRAPQ9Y3F4 350 aaKnown RBP17.03■□□□□ 0.32
VPS28-212ENST00000530836 J3QLI3 93 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 VENTXO95231 258 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 SSX2Q16385 188 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 SPANXN5Q5MJ07 72 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 TMEM14EPQ6UXP3 125 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 CFHR4Q92496 578 aa17.03■□□□□ 0.32
VPS28-212ENST00000530836 H3BP45 60 aa17.02■□□□□ 0.31
VPS28-212ENST00000530836 NPFFO15130 113 aa17.02■□□□□ 0.31
VPS28-212ENST00000530836 NDUFA5Q16718 116 aa17.02■□□□□ 0.31
VPS28-212ENST00000530836 OR1S2Q8NGQ3 325 aa17.02■□□□□ 0.31
VPS28-212ENST00000530836 ZDHHC16Q969W1 377 aa17.02■□□□□ 0.31
VPS28-212ENST00000530836 COMMD5Q9GZQ3 224 aa17.02■□□□□ 0.31
VPS28-212ENST00000530836 SVEP1Q4LDE5 3571 aa17.01■□□□□ 0.31
VPS28-212ENST00000530836 SONP18583 2426 aaKnown RBP17.01■□□□□ 0.31
VPS28-212ENST00000530836 CENPVL3A0A0U1RRI6 287 aa17.01■□□□□ 0.31
VPS28-212ENST00000530836 A0A1W2PRD5 423 aa17.01■□□□□ 0.31
VPS28-212ENST00000530836 A0A1W2PRF3 423 aa17.01■□□□□ 0.31
VPS28-212ENST00000530836 A0A1W2PRM7 423 aa17.01■□□□□ 0.31
VPS28-212ENST00000530836 INAFM1C9JVW0 142 aa17.01■□□□□ 0.31
VPS28-212ENST00000530836 DFFBO76075 338 aa17.01■□□□□ 0.31
VPS28-212ENST00000530836 MOSP00540 346 aa17.01■□□□□ 0.31
VPS28-212ENST00000530836 MAS1LP35410 378 aa17.01■□□□□ 0.31
VPS28-212ENST00000530836 HOXA1P49639 335 aaPredicted RBP17.01■□□□□ 0.31
VPS28-212ENST00000530836 PRCDQ00LT1 54 aa17.01■□□□□ 0.31
VPS28-212ENST00000530836 RPL7L1Q6DKI1 246 aaKnown RBP17.01■□□□□ 0.31
VPS28-212ENST00000530836 OR5C1Q8NGR4 320 aa17.01■□□□□ 0.31
VPS28-212ENST00000530836 C7orf69Q9H7B7 122 aa17.01■□□□□ 0.31
VPS28-212ENST00000530836 HEYLQ9NQ87 328 aaPredicted RBP17.01■□□□□ 0.31
VPS28-212ENST00000530836 NSD1Q96L73 2696 aaPredicted RBP17.01■□□□□ 0.31
VPS28-212ENST00000530836 SLC25A17O43808 307 aa17■□□□□ 0.31
VPS28-212ENST00000530836 CST7O76096 145 aa17■□□□□ 0.31
VPS28-212ENST00000530836 SAA4P35542 130 aa17■□□□□ 0.31
VPS28-212ENST00000530836 VDAC2P45880 294 aaPredicted RBP17■□□□□ 0.31
VPS28-212ENST00000530836 ATP5IP56385 69 aaPredicted RBP17■□□□□ 0.31
VPS28-212ENST00000530836 RAB14P61106 215 aa17■□□□□ 0.31
VPS28-212ENST00000530836 PSG5Q15238 335 aa17■□□□□ 0.31
VPS28-212ENST00000530836 MMD2Q8IY49 270 aa17■□□□□ 0.31
VPS28-212ENST00000530836 OR1L8Q8NGR8 309 aa17■□□□□ 0.31
VPS28-212ENST00000530836 OR2T10Q8NGZ9 312 aa17■□□□□ 0.31
VPS28-212ENST00000530836 SMIM3Q9BZL3 60 aa17■□□□□ 0.31
VPS28-212ENST00000530836 PLEKHA3Q9HB20 300 aa17■□□□□ 0.31
VPS28-212ENST00000530836 ANK3Q12955 4377 aaKnown RBP17■□□□□ 0.31
VPS28-212ENST00000530836 TEX50A0A1B0GTY4 177 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 BRS3P32247 399 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 FAM120AOSQ5T036 256 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 IGHV1-69DA0A0B4J2H0 117 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 INS-IGF2F8WCM5 200 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 AVPP01185 164 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms