RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-208ENST00000528768 HAPLN4Q86UW8 402 aa9.64□□□□□ -0.87
USF1-208ENST00000528768 FAM216BQ8N7L0 139 aa9.64□□□□□ -0.87
USF1-208ENST00000528768 C15orf54Q8N8G6 183 aa9.64□□□□□ -0.87
USF1-208ENST00000528768 CT45A3Q8NHU0 189 aa9.64□□□□□ -0.87
USF1-208ENST00000528768 PLPPR2Q96GM1 343 aa9.64□□□□□ -0.87
USF1-208ENST00000528768 RSG1Q9BU20 258 aa9.64□□□□□ -0.87
USF1-208ENST00000528768 QTRT1Q9BXR0 403 aaKnown RBP9.64□□□□□ -0.87
USF1-208ENST00000528768 ACTR3CQ9C0K3 210 aaPredicted RBP9.64□□□□□ -0.87
USF1-208ENST00000528768 TUBA4BQ9H853 241 aa9.64□□□□□ -0.87
USF1-208ENST00000528768 TMEM140Q9NV12 185 aa9.64□□□□□ -0.87
USF1-208ENST00000528768 FKBP11Q9NYL4 201 aa9.64□□□□□ -0.87
USF1-208ENST00000528768 MLXQ9UH92 298 aa9.64□□□□□ -0.87
USF1-208ENST00000528768 PRNDQ9UKY0 176 aa9.64□□□□□ -0.87
USF1-208ENST00000528768 SAA2-SAA4A0A096LPE2 208 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 C9JQL5 133 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 RNF223E7ERA6 249 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 NDUFS6O75380 124 aaKnown RBP9.63□□□□□ -0.87
USF1-208ENST00000528768 OR9G9P0C7N8 305 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 SAA2P0DJI9 122 aaPredicted RBP9.63□□□□□ -0.87
USF1-208ENST00000528768 OR13C7P0DN81 318 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 PAX6P26367 422 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 IL3RAP26951 378 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 HOXA1P49639 335 aaPredicted RBP9.63□□□□□ -0.87
USF1-208ENST00000528768 PMS2P11Q13670 270 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 HAGHQ16775 308 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 CLEC12BQ2HXU8 276 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 VWC2Q2TAL6 325 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 ACOT6Q3I5F7 207 aaPredicted RBP9.63□□□□□ -0.87
USF1-208ENST00000528768 KRTAP24-1Q3LI83 254 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 KIAA2026Q5HYC2 2103 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 FAM53AQ6NSI3 398 aaPredicted RBP9.63□□□□□ -0.87
USF1-208ENST00000528768 FAM71F2Q6NXP2 309 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 SLC25A48Q6ZT89 311 aaKnown RBP9.63□□□□□ -0.87
USF1-208ENST00000528768 DDB2Q92466 427 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 ZNF714Q96N38 554 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 P2RX4Q99571 388 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 C19orf24Q9BVV8 132 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 SCRT1Q9BWW7 348 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 RPRMQ9NS64 109 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 TMEM160Q9NX00 188 aa9.63□□□□□ -0.87
USF1-208ENST00000528768 CISD1Q9NZ45 108 aaKnown RBP9.63□□□□□ -0.87
USF1-208ENST00000528768 CTXND1A0A1B0GTU2 59 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 LOC102723971A0A1B0GUV8 181 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 A0A1W2PPH5 198 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 MEX3AA1L020 520 aaKnown RBP9.62□□□□□ -0.87
USF1-208ENST00000528768 MAP1LC3B2A6NCE7 125 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 SIAH2O43255 324 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 SNRNP70P08621 437 aaKnown RBP9.62□□□□□ -0.87
USF1-208ENST00000528768 SRP19P09132 144 aaKnown RBP9.62□□□□□ -0.87
USF1-208ENST00000528768 SELLP14151 372 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 ZNF134P52741 427 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 HSPE1P61604 102 aaKnown RBP9.62□□□□□ -0.87
USF1-208ENST00000528768 DLK1P80370 383 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 RELBQ01201 579 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 RAB31Q13636 194 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 POU2AF1Q16633 256 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 HFEQ30201 348 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 AKIRIN2Q53H80 203 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 AWAT1Q58HT5 328 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 AVPI1Q5T686 147 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 TMEM88Q6PEY1 159 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 HEPN1Q6WQI6 88 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 ETV3LQ6ZN32 361 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 SSX9Q7RTT3 188 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 CBLN2Q8IUK8 224 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 C8orf31Q8N9H6 132 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 ZNF439Q8NDP4 499 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 CLDND2Q8NHS1 167 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 RXFP4Q8TDU9 374 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 CCL17Q92583 94 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 LHX4Q969G2 390 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 NIPSNAP3BQ9BS92 247 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 MAP1LC3BQ9GZQ8 125 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 SLC35D1Q9NTN3 355 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 GNG13Q9P2W3 67 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 KAAG1Q9UBP8 84 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 VAX2Q9UIW0 290 aa9.62□□□□□ -0.87
USF1-208ENST00000528768 FOXA2Q9Y261 457 aaPredicted RBP9.62□□□□□ -0.87
USF1-208ENST00000528768 RAI1Q7Z5J4 1906 aaPredicted RBP9.62□□□□□ -0.87
USF1-208ENST00000528768 ANK3Q12955 4377 aaKnown RBP9.61□□□□□ -0.87
USF1-208ENST00000528768 IGHV1-69-2A0A0G2JMI3 117 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 C7orf77A4D0Y5 90 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 C15orf61A6NNL5 157 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 PMS2P5A8MQ11 134 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 B4DEV8 164 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 SHISA9B4DS77 424 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 E7EQL1 145 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 SLC31A2O15432 143 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 PROP1O75360 226 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 BCL2P10415 239 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 CD1BP29016 333 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 GNG10P50151 68 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 ELLP55199 621 aaPredicted RBP9.61□□□□□ -0.87
USF1-208ENST00000528768 CCL20P78556 96 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 ICAM4Q14773 271 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 FFAR4Q5NUL3 377 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 LCN15Q6UWW0 184 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 H1FXQ92522 213 aaKnown RBP9.61□□□□□ -0.87
USF1-208ENST00000528768 ZDHHC16Q969W1 377 aa9.61□□□□□ -0.87
USF1-208ENST00000528768 TVP23CQ96ET8 276 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms