RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 DVL1P1P54792 670 aaPredicted RBP16.75■□□□□ 0.27
VPS28-209ENST00000528142 PRCDQ00LT1 54 aa16.75■□□□□ 0.27
VPS28-209ENST00000528142 OR4P4Q8NGL7 312 aa16.75■□□□□ 0.27
VPS28-209ENST00000528142 IGFBPL1Q8WX77 278 aa16.75■□□□□ 0.27
VPS28-209ENST00000528142 FKBP11Q9NYL4 201 aa16.75■□□□□ 0.27
VPS28-209ENST00000528142 COX7A1P24310 79 aa16.75■□□□□ 0.27
VPS28-209ENST00000528142 C10orf91Q5T1B1 145 aa16.75■□□□□ 0.27
VPS28-209ENST00000528142 ETV3LQ6ZN32 361 aa16.75■□□□□ 0.27
VPS28-209ENST00000528142 FAM157AC9JC47 383 aa16.74■□□□□ 0.27
VPS28-209ENST00000528142 C9JQL5 133 aa16.74■□□□□ 0.27
VPS28-209ENST00000528142 LY6LH3BQJ8 138 aa16.74■□□□□ 0.27
VPS28-209ENST00000528142 M0R1W7 72 aa16.74■□□□□ 0.27
VPS28-209ENST00000528142 APOC3P02656 99 aa16.74■□□□□ 0.27
VPS28-209ENST00000528142 H2AFB1P0C5Y9 115 aa16.74■□□□□ 0.27
VPS28-209ENST00000528142 ARF6P62330 175 aa16.74■□□□□ 0.27
VPS28-209ENST00000528142 PNKDQ8N490 385 aa16.74■□□□□ 0.27
VPS28-209ENST00000528142 LFNGQ8NES3 379 aa16.74■□□□□ 0.27
VPS28-209ENST00000528142 OR5B3Q8NH48 314 aa16.74■□□□□ 0.27
VPS28-209ENST00000528142 OR4A5Q8NH83 315 aa16.74■□□□□ 0.27
VPS28-209ENST00000528142 TMEM167AQ8TBQ9 72 aa16.74■□□□□ 0.27
VPS28-209ENST00000528142 MS4A7Q9GZW8 240 aaPredicted RBP16.74■□□□□ 0.27
VPS28-209ENST00000528142 VSIRQ9H7M9 311 aa16.74■□□□□ 0.27
VPS28-209ENST00000528142 RPRMQ9NS64 109 aa16.74■□□□□ 0.27
VPS28-209ENST00000528142 CCL20P78556 96 aa16.73■□□□□ 0.27
VPS28-209ENST00000528142 GGACTQ9BVM4 153 aa16.73■□□□□ 0.27
VPS28-209ENST00000528142 ENY2Q9NPA8 101 aa16.73■□□□□ 0.27
VPS28-209ENST00000528142 DOCK11Q5JSL3 2073 aa16.73■□□□□ 0.27
VPS28-209ENST00000528142 FGF7P21781 194 aa16.73■□□□□ 0.27
VPS28-209ENST00000528142 TLE4Q04727 773 aa16.73■□□□□ 0.27
VPS28-209ENST00000528142 SLC24A4Q8NFF2 622 aa16.73■□□□□ 0.27
VPS28-209ENST00000528142 OR11H6Q8NGC7 330 aa16.73■□□□□ 0.27
VPS28-209ENST00000528142 VSTM2AQ8TAG5 236 aa16.73■□□□□ 0.27
VPS28-209ENST00000528142 RITA1Q96K30 269 aa16.73■□□□□ 0.27
VPS28-209ENST00000528142 AMMECR1Q9Y4X0 333 aaPredicted RBP16.73■□□□□ 0.27
VPS28-209ENST00000528142 TET2Q6N021 2002 aaPredicted RBP16.72■□□□□ 0.27
VPS28-209ENST00000528142 IGHV1-3A0A0C4DH29 117 aa16.72■□□□□ 0.27
VPS28-209ENST00000528142 OPN1MWP04001 364 aa16.72■□□□□ 0.27
VPS28-209ENST00000528142 OPN1MW2P0DN77 364 aa16.72■□□□□ 0.27
VPS28-209ENST00000528142 OPN1MW3P0DN78 364 aa16.72■□□□□ 0.27
VPS28-209ENST00000528142 USF1P22415 310 aaPredicted RBP16.72■□□□□ 0.27
VPS28-209ENST00000528142 CD1BP29016 333 aa16.72■□□□□ 0.27
VPS28-209ENST00000528142 RAB11AP62491 216 aa16.72■□□□□ 0.27
VPS28-209ENST00000528142 RPL8P62917 257 aaKnown RBP16.72■□□□□ 0.27
VPS28-209ENST00000528142 GUK1Q16774 197 aa16.72■□□□□ 0.27
VPS28-209ENST00000528142 HINT2Q9BX68 163 aa16.72■□□□□ 0.27
VPS28-209ENST00000528142 PLEKHA3Q9HB20 300 aa16.72■□□□□ 0.27
VPS28-209ENST00000528142 WDR83OSQ9Y284 106 aa16.72■□□□□ 0.27
VPS28-209ENST00000528142 KLF2Q9Y5W3 355 aaPredicted RBP16.72■□□□□ 0.27
VPS28-209ENST00000528142 IGHV3-72A0A0B4J1Y9 119 aa16.71■□□□□ 0.27
VPS28-209ENST00000528142 TRAV1-1A0A0B4J248 108 aa16.71■□□□□ 0.27
VPS28-209ENST00000528142 A0A1B0GV50 99 aa16.71■□□□□ 0.27
VPS28-209ENST00000528142 A0A1B0GW64 132 aa16.71■□□□□ 0.27
VPS28-209ENST00000528142 BTBD17A6NE02 478 aa16.71■□□□□ 0.27
VPS28-209ENST00000528142 CA2P00918 260 aa16.71■□□□□ 0.27
VPS28-209ENST00000528142 IGHV2-5P01817 119 aa16.71■□□□□ 0.27
VPS28-209ENST00000528142 PRTN3P24158 256 aa16.71■□□□□ 0.27
VPS28-209ENST00000528142 NPY1RP25929 384 aa16.71■□□□□ 0.27
VPS28-209ENST00000528142 ZFP36P26651 326 aaKnown RBP16.71■□□□□ 0.27
VPS28-209ENST00000528142 LGALS7P47929 136 aa16.71■□□□□ 0.27
VPS28-209ENST00000528142 NPCDR1Q9BY65 106 aa16.71■□□□□ 0.27
VPS28-209ENST00000528142 CARHSP1Q9Y2V2 147 aaKnown RBP16.71■□□□□ 0.27
VPS28-209ENST00000528142 INSIG2Q9Y5U4 225 aa16.71■□□□□ 0.27
VPS28-209ENST00000528142 LRRK2Q5S007 2527 aa16.71■□□□□ 0.27
VPS28-209ENST00000528142 DLK1P80370 383 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 ZNF726P1Q15940 193 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 TMEM41BQ5BJD5 291 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 LDLRAD2Q5SZI1 272 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 HCP5Q6MZN7 132 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 C1orf122Q6ZSJ8 110 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 SFT2D1Q8WV19 159 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 SIRT7Q9NRC8 400 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 NDUFA4L2Q9NRX3 87 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 TENM4Q6N022 2769 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 F8W036 122 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 IFNA4P05014 189 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 PEA15Q15121 130 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 MRGPRG-AS1Q2M3A8 158 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 ATRAIDQ6UW56 229 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 MBD3L1Q8WWY6 194 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 SPOCK3Q9BQ16 436 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 SEC11CQ9BY50 192 aa16.7■□□□□ 0.26
VPS28-209ENST00000528142 ENSAO43768 121 aaKnown RBP16.69■□□□□ 0.26
VPS28-209ENST00000528142 IGHV4-39P01824 125 aa16.69■□□□□ 0.26
VPS28-209ENST00000528142 SFTA3P0C7M3 94 aa16.69■□□□□ 0.26
VPS28-209ENST00000528142 PLA2G2AP14555 144 aa16.69■□□□□ 0.26
VPS28-209ENST00000528142 HNF4GQ14541 408 aa16.69■□□□□ 0.26
VPS28-209ENST00000528142 BSXQ3C1V8 233 aa16.69■□□□□ 0.26
VPS28-209ENST00000528142 VMA21Q3ZAQ7 101 aa16.69■□□□□ 0.26
VPS28-209ENST00000528142 ACSM6Q6P461 480 aa16.69■□□□□ 0.26
VPS28-209ENST00000528142 KIR3DL3Q8N743 410 aa16.69■□□□□ 0.26
VPS28-209ENST00000528142 RPEQ96AT9 228 aa16.69■□□□□ 0.26
VPS28-209ENST00000528142 COMMD5Q9GZQ3 224 aa16.69■□□□□ 0.26
VPS28-209ENST00000528142 INS-IGF2F8WCM5 200 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 IGKV1D-33P01593 117 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 IGKV1-33P01594 117 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 HBE1P02100 147 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 ELLP55199 621 aaPredicted RBP16.68■□□□□ 0.26
VPS28-209ENST00000528142 DEFA5Q01523 94 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 PAX2Q02962 417 aa16.68■□□□□ 0.26
VPS28-209ENST00000528142 MOB3BQ86TA1 216 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms