RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 FUT7Q11130 342 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 RUNX3Q13761 415 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 ZIC1Q15915 447 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 CCL15Q16663 113 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 CTXN3Q4LDR2 81 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 PHLDA2Q53GA4 152 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 PDLIM3Q53GG5 364 aaPredicted RBP4.85□□□□□ -1.63
CD44-225ENST00000527326 NMSQ5H8A3 153 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 CXorf66Q5JRM2 361 aaPredicted RBP4.85□□□□□ -1.63
CD44-225ENST00000527326 PSMG4Q5JS54 123 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 TMEM78Q5T7P6 136 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 TMEM215Q68D42 235 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 SLC35E4Q6ICL7 350 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 ZNF793Q6ZN11 406 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 WDR5BQ86VZ2 330 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 Q8N1Y9 231 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 RPP25LQ8N5L8 163 aaKnown RBP4.85□□□□□ -1.63
CD44-225ENST00000527326 SUMF1Q8NBK3 374 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 KLHDC9Q8NEP7 349 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 H1FXQ92522 213 aaKnown RBP4.85□□□□□ -1.63
CD44-225ENST00000527326 ZNF501Q96CX3 271 aaPredicted RBP4.85□□□□□ -1.63
CD44-225ENST00000527326 ADTRPQ96IZ2 230 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 DNAJC30Q96LL9 226 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 DGAT2Q96PD7 388 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 TM2D2Q9BX73 214 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 MAP1LC3CQ9BXW4 147 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 KRTAP4-11Q9BYQ6 195 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 S1PR5Q9H228 398 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 SLC25A22Q9H936 323 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 FAM60AQ9NP50 221 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 OSTCQ9NRP0 149 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 LIN7CQ9NUP9 197 aaKnown RBP4.85□□□□□ -1.63
CD44-225ENST00000527326 POLDIP2Q9Y2S7 368 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 KMT2EQ8IZD2 1858 aa4.85□□□□□ -1.63
CD44-225ENST00000527326 HTTP42858 3142 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 ATG2AQ2TAZ0 1938 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 KIR2DS5A0A0G2JLQ3 304 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 A0A0G2JNG1 304 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 A1L4Q6 167 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 IZUMO1RA6ND01 250 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 TMEM202A6NGA9 273 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 TMEM262E9PQX1 116 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 F8WDY8 70 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 HMGB3O15347 200 aaKnown RBP4.84□□□□□ -1.63
CD44-225ENST00000527326 B3GALT2O43825 422 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 TBL1XO60907 577 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 OR2J3O76001 311 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 NDUFB4O95168 129 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 MT-ATP8P03928 68 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 C8orf89P0DMQ9 161 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 VDAC2P45880 294 aaPredicted RBP4.84□□□□□ -1.63
CD44-225ENST00000527326 FASLGP48023 281 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 MFAP4P55083 255 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 SUMO3P55854 103 aaPredicted RBP4.84□□□□□ -1.63
CD44-225ENST00000527326 CLDN17P56750 224 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 FXYD4P59646 89 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 NTHL1P78549 312 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 ATP5G2Q06055 141 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 FOXI1Q12951 378 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 CATR1Q13166 79 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 KIR2DS5Q14953 304 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 ZNF146Q15072 292 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 TRIP6Q15654 476 aaKnown RBP4.84□□□□□ -1.63
CD44-225ENST00000527326 CEACAM16Q2WEN9 425 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 DMRTC1Q5HYR2 192 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 TSPO2Q5TGU0 170 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 OTPQ5XKR4 325 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 RNASEKQ6P5S7 137 aaKnown RBP4.84□□□□□ -1.63
CD44-225ENST00000527326 Q6Q795 121 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 LINC00696Q6ZRV3 163 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 RNF44Q7L0R7 432 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 PRSS41Q7RTY9 318 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 OR2T6Q8NHC8 308 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 PPP1R35Q8TAP8 253 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 Q8TCH9 128 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 SSC4DQ8WTU2 575 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 ZC2HC1AQ96GY0 325 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 OXGR1Q96P68 337 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 MAP1LC3AQ9H492 121 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 ZNF331Q9NQX6 463 aaPredicted RBP4.84□□□□□ -1.63
CD44-225ENST00000527326 TNFRSF19Q9NS68 423 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 PSENENQ9NZ42 101 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 B4GALT7Q9UBV7 327 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 TAC3Q9UHF0 121 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 NXT1Q9UKK6 140 aaKnown RBP4.84□□□□□ -1.63
CD44-225ENST00000527326 HEBP2Q9Y5Z4 205 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 V9GYV3 84 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 X6R8D5 127 aa4.84□□□□□ -1.63
CD44-225ENST00000527326 VWA8A3KMH1 1905 aa4.84□□□□□ -1.64
CD44-225ENST00000527326 BPTFQ12830 3046 aa4.83□□□□□ -1.64
CD44-225ENST00000527326 IGKV1D-8A0A087WSZ0 117 aa4.83□□□□□ -1.64
CD44-225ENST00000527326 IGLV1-36A0A0B4J1U3 117 aa4.83□□□□□ -1.64
CD44-225ENST00000527326 A0A0G2JLL6 359 aaPredicted RBP4.83□□□□□ -1.64
CD44-225ENST00000527326 A0A1W2PP11 408 aa4.83□□□□□ -1.64
CD44-225ENST00000527326 A0A1W2PRE2 83 aa4.83□□□□□ -1.64
CD44-225ENST00000527326 FAM90A26D6RGX4 464 aa4.83□□□□□ -1.64
CD44-225ENST00000527326 FNDC10F2Z333 226 aa4.83□□□□□ -1.64
CD44-225ENST00000527326 H3BMG7 143 aa4.83□□□□□ -1.64
CD44-225ENST00000527326 RHODO00212 210 aa4.83□□□□□ -1.64
CD44-225ENST00000527326 LMX1BO60663 402 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms