RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 IGLV1-40P01703 118 aa16.27■□□□□ 0.2
CD44-222ENST00000526025 TCRBP04435 133 aa16.27■□□□□ 0.2
CD44-222ENST00000526025 RPL27AP46776 148 aaKnown RBP16.27■□□□□ 0.2
CD44-222ENST00000526025 AKR1C2P52895 323 aa16.27■□□□□ 0.2
CD44-222ENST00000526025 CD83Q01151 205 aa16.27■□□□□ 0.2
CD44-222ENST00000526025 ECSCRQ19T08 205 aa16.27■□□□□ 0.2
CD44-222ENST00000526025 ZNF329Q86UD4 541 aa16.27■□□□□ 0.2
CD44-222ENST00000526025 ZNF695Q8IW36 515 aa16.27■□□□□ 0.2
CD44-222ENST00000526025 SELENOHQ8IZQ5 122 aaKnown RBP16.27■□□□□ 0.2
CD44-222ENST00000526025 OR5M8Q8NGP6 311 aa16.27■□□□□ 0.2
CD44-222ENST00000526025 C20orf85Q9H1P6 137 aa16.27■□□□□ 0.2
CD44-222ENST00000526025 FOXA2Q9Y261 457 aaPredicted RBP16.27■□□□□ 0.2
CD44-222ENST00000526025 WSB1Q9Y6I7 421 aa16.27■□□□□ 0.2
CD44-222ENST00000526025 TRAV3A0A0B4J244 114 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 FAM240BA0A1B0GVZ2 78 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 DUXBA0A1W2PPF3 345 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 BRI3O95415 125 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 SFT2D2O95562 160 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 OPN1MWP04001 364 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 OPN1MW2P0DN77 364 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 OPN1MW3P0DN78 364 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 PPP1R1AQ13522 171 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 UNQ5815/PRO19632Q6UWF5 114 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 LGI3Q8N145 548 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 LRTM2Q8N967 370 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 LFNGQ8NES3 379 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 LHFPL5Q8TAF8 219 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 LSM10Q969L4 123 aaKnown RBP16.26■□□□□ 0.19
CD44-222ENST00000526025 RRNAD1Q96FB5 475 aaKnown RBP16.26■□□□□ 0.19
CD44-222ENST00000526025 FAM103A1Q9BTL3 118 aaKnown RBP16.26■□□□□ 0.19
CD44-222ENST00000526025 COMMD5Q9GZQ3 224 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 TMEM14BQ9NUH8 114 aa16.26■□□□□ 0.19
CD44-222ENST00000526025 MSGN1A6NI15 193 aa16.25■□□□□ 0.19
CD44-222ENST00000526025 C15orf61A6NNL5 157 aa16.25■□□□□ 0.19
CD44-222ENST00000526025 H3BUA1 57 aa16.25■□□□□ 0.19
CD44-222ENST00000526025 OR9G9P0C7N8 305 aa16.25■□□□□ 0.19
CD44-222ENST00000526025 CD28P10747 220 aa16.25■□□□□ 0.19
CD44-222ENST00000526025 VAMP1P23763 118 aa16.25■□□□□ 0.19
CD44-222ENST00000526025 PSMB8P28062 276 aa16.25■□□□□ 0.19
CD44-222ENST00000526025 MECP2P51608 486 aaKnown RBP16.25■□□□□ 0.19
CD44-222ENST00000526025 TCTEX1D4Q5JR98 221 aa16.25■□□□□ 0.19
CD44-222ENST00000526025 TMEM268Q5VZI3 342 aa16.25■□□□□ 0.19
CD44-222ENST00000526025 C10orf99Q6UWK7 81 aa16.25■□□□□ 0.19
CD44-222ENST00000526025 OR5B3Q8NH48 314 aa16.25■□□□□ 0.19
CD44-222ENST00000526025 PALMDQ9NP74 551 aa16.25■□□□□ 0.19
CD44-222ENST00000526025 FLVCR2Q9UPI3 526 aa16.25■□□□□ 0.19
CD44-222ENST00000526025 ZNF257Q9Y2Q1 563 aa16.25■□□□□ 0.19
CD44-222ENST00000526025 A0A0B4J2A0 478 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 TEX22C9J3V5 150 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 OR2B8PP59922 312 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 SRSF4Q08170 494 aaKnown RBP16.24■□□□□ 0.19
CD44-222ENST00000526025 CXorf66Q5JRM2 361 aaPredicted RBP16.24■□□□□ 0.19
CD44-222ENST00000526025 C10orf55Q5SWW7 151 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 ASPHD1Q5U4P2 390 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 HSD17B13Q7Z5P4 300 aaPredicted RBP16.24■□□□□ 0.19
CD44-222ENST00000526025 ZNF429Q86V71 674 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 NDUFA11Q86Y39 141 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 DUSP18Q8NEJ0 188 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 OR1L8Q8NGR8 309 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 OR4A16Q8NH70 328 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 ENKURQ8TC29 256 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 MYOZ3Q8TDC0 251 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 PHB2Q99623 299 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 QTRT1Q9BXR0 403 aaKnown RBP16.24■□□□□ 0.19
CD44-222ENST00000526025 ZFP57Q9NU63 452 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 SHPKQ9UHJ6 478 aa16.24■□□□□ 0.19
CD44-222ENST00000526025 DNHD1Q96M86 4753 aa16.23■□□□□ 0.19
CD44-222ENST00000526025 OR4E1P0C645 316 aa16.23■□□□□ 0.19
CD44-222ENST00000526025 AARDQ4LEZ3 155 aa16.23■□□□□ 0.19
CD44-222ENST00000526025 RNASE11Q8TAA1 199 aaKnown RBP16.23■□□□□ 0.19
CD44-222ENST00000526025 FAM110DQ8TAY7 271 aaPredicted RBP16.23■□□□□ 0.19
CD44-222ENST00000526025 NUDT15Q9NV35 164 aa16.23■□□□□ 0.19
CD44-222ENST00000526025 OR51B2Q9Y5P1 312 aa16.23■□□□□ 0.19
CD44-222ENST00000526025 TSSC4Q9Y5U2 329 aaPredicted RBP16.23■□□□□ 0.19
CD44-222ENST00000526025 A0A1W2PN81 502 aa16.22■□□□□ 0.19
CD44-222ENST00000526025 C9orf170A2RU37 121 aa16.22■□□□□ 0.19
CD44-222ENST00000526025 SOX15O60248 233 aa16.22■□□□□ 0.19
CD44-222ENST00000526025 CHRNA7P36544 502 aa16.22■□□□□ 0.19
CD44-222ENST00000526025 DHRS2Q13268 280 aa16.22■□□□□ 0.19
CD44-222ENST00000526025 LYG2Q86SG7 212 aa16.22■□□□□ 0.19
CD44-222ENST00000526025 TTC9CQ8N5M4 171 aa16.22■□□□□ 0.19
CD44-222ENST00000526025 SLC35G3Q8N808 338 aa16.22■□□□□ 0.19
CD44-222ENST00000526025 CITED2Q99967 270 aaPredicted RBP16.22■□□□□ 0.19
CD44-222ENST00000526025 SLA2Q9H6Q3 261 aa16.22■□□□□ 0.19
CD44-222ENST00000526025 NDUFA4L2Q9NRX3 87 aa16.22■□□□□ 0.19
CD44-222ENST00000526025 CACFD1Q9UGQ2 172 aa16.22■□□□□ 0.19
CD44-222ENST00000526025 A0A0B4J293 547 aa16.21■□□□□ 0.19
CD44-222ENST00000526025 TEX50A0A1B0GTY4 177 aa16.21■□□□□ 0.19
CD44-222ENST00000526025 A0A1B0GW64 132 aa16.21■□□□□ 0.19
CD44-222ENST00000526025 TCRBV4S1A1TA0A5B7 111 aa16.21■□□□□ 0.19
CD44-222ENST00000526025 CGB1A6NKQ9 187 aa16.21■□□□□ 0.19
CD44-222ENST00000526025 NPIPB5A8MRT5 1133 aa16.21■□□□□ 0.19
CD44-222ENST00000526025 E7EUB6 86 aa16.21■□□□□ 0.19
CD44-222ENST00000526025 DUS4LO95620 317 aaKnown RBP16.21■□□□□ 0.19
CD44-222ENST00000526025 HLA-AP01891 365 aaKnown RBP16.21■□□□□ 0.19
CD44-222ENST00000526025 H2AFB2P0C5Z0 115 aa16.21■□□□□ 0.19
CD44-222ENST00000526025 ANXA7P20073 488 aaKnown RBP16.21■□□□□ 0.19
CD44-222ENST00000526025 RAB25P57735 213 aa16.21■□□□□ 0.19
CD44-222ENST00000526025 ANKRD55Q3KP44 614 aa16.21■□□□□ 0.19
CD44-222ENST00000526025 COA4Q9NYJ1 87 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms