RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 ZNF846Q147U1 533 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 MRGPRG-AS1Q2M3A8 158 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 AKIRIN2Q53H80 203 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 MINDY2Q8NBR6 621 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 OR5M8Q8NGP6 311 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 OR4A16Q8NH70 328 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 CCDC32Q9BV29 185 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 WDR12Q9GZL7 423 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 FAM212BQ9NTI7 297 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 ZFP57Q9NU63 452 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 KCNIP3Q9Y2W7 256 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 TNCP24821 2201 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 HMX3A6NHT5 357 aa8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 CRYM-AS1A6NIL9 109 aa8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 B3GALNT1O75752 331 aa8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 TRGV3P03979 118 aa8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 PPIFP30405 207 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 RAB9AP51151 201 aa8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 MECP2P51608 486 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 RBMS2Q15434 407 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 POU2AF1Q16633 256 aa8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 LINC00299Q6ZSB3 139 aa8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 C18orf65Q6ZTR6 163 aa8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 ZNF695Q8IW36 515 aa8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 TMEM68Q96MH6 324 aa8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 OR5B12Q96R08 314 aa8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 SLC25A21Q9BQT8 299 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 KLK15Q9H2R5 256 aa8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 DNHD1Q96M86 4753 aa8.93□□□□□ -0.98
LIMCH1-210ENST00000509454 ADARB2-AS1A8MUL3 147 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 SOX15O60248 233 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 IGKV1-39P01597 117 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 IGLV1-40P01703 118 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 IGKV1D-39P04432 117 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 OR9G9P0C7N8 305 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 ANXA3P12429 323 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 VAMP1P23763 118 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 PSMB8P28062 276 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 RAB25P57735 213 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 DHODHQ02127 395 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 PRR31Q5SQ13 230 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 TREML4Q6UXN2 200 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 C8orf86Q6ZUL3 223 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 RRNAD1Q96FB5 475 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 TSC22D3Q99576 134 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 C7orf50Q9BRJ6 194 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 PRNDQ9UKY0 176 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 OR51B2Q9Y5P1 312 aa8.92□□□□□ -0.98
LIMCH1-210ENST00000509454 C13orf42A0A1B0GVH6 325 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 LYRM1O43325 122 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 IGHV3-11P01762 117 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 REG1AP05451 166 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 IL6RP08887 468 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 UCP1P25874 307 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 IZUMO4Q1ZYL8 232 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 C19orf54Q5BKX5 351 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 ASPHD1Q5U4P2 390 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 TMEM268Q5VZI3 342 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 SLC25A42Q86VD7 318 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 CENPSQ8N2Z9 138 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 OR1L8Q8NGR8 309 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 TMEM230Q96A57 120 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 SEC22AQ96IW7 307 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 TMEM222Q9H0R3 208 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 FKBP11Q9NYL4 201 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 PRR13Q9NZ81 148 aa8.91□□□□□ -0.98
LIMCH1-210ENST00000509454 PRH1P02810 166 aa8.9□□□□□ -0.98
LIMCH1-210ENST00000509454 TRAPPC2P0DI81 140 aa8.9□□□□□ -0.98
LIMCH1-210ENST00000509454 TRAPPC2BP0DI82 140 aa8.9□□□□□ -0.98
LIMCH1-210ENST00000509454 DEFA4P12838 97 aa8.9□□□□□ -0.98
LIMCH1-210ENST00000509454 AREGP15514 252 aa8.9□□□□□ -0.98
LIMCH1-210ENST00000509454 DEFA5Q01523 94 aa8.9□□□□□ -0.98
LIMCH1-210ENST00000509454 DEFB136Q30KP8 78 aa8.9□□□□□ -0.98
LIMCH1-210ENST00000509454 ZNF491Q8N8L2 437 aa8.9□□□□□ -0.98
LIMCH1-210ENST00000509454 RNF152Q8N8N0 203 aa8.9□□□□□ -0.98
LIMCH1-210ENST00000509454 DUX3Q96PT4 197 aa8.9□□□□□ -0.98
LIMCH1-210ENST00000509454 PDCD10Q9BUL8 212 aa8.9□□□□□ -0.98
LIMCH1-210ENST00000509454 QTRT1Q9BXR0 403 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-210ENST00000509454 SLA2Q9H6Q3 261 aa8.9□□□□□ -0.98
LIMCH1-210ENST00000509454 WNK1Q9H4A3 2382 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 TEX50A0A1B0GTY4 177 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 TEX22C9J3V5 150 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 E7EUB6 86 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 H3BUA1 57 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 NDUFB6O95139 128 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 DHFRP00374 187 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 IGKV1-5P01602 117 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 CDX1P47902 265 aaPredicted RBP8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 TMEM128Q5BJH2 165 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 MZT2BQ6NZ67 158 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 SELENOHQ8IZQ5 122 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 GLYATL2Q8WU03 294 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 C4orf3Q8WVX3 66 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 DPF1Q92782 380 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 RBPMSQ93062 196 aaKnown RBP8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 UBE2E2Q96LR5 201 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 GNB4Q9HAV0 340 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 FLVCR2Q9UPI3 526 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 ANK2Q01484 3957 aa8.9□□□□□ -0.99
LIMCH1-210ENST00000509454 C15orf61A6NNL5 157 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms