RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, human

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD3-208	ENST00000497026	TMEM249	Q2WGJ8	235 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	KRTAP27-1	Q3LI81	207 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	SPRN	Q5BIV9	151 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	GPR157	Q5UAW9	335 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	AADACL3	Q5VUY0	350 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	ACSM6	Q6P461	480 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	KCNIP4	Q6PIL6	250 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	DNM1P34	Q6PK57	102 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	SLC16A9	Q7RTY1	509 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	C5orf24	Q7Z6I8	188 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	LINC00346	Q8IVM7	164 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	SGPP2	Q8IWX5	399 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	ZNF738	Q8NE65	137 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR51D1	Q8NGF3	324 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR52L2P	Q8NGH6	319 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR51L1	Q8NGJ5	315 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR51A2	Q8NGJ7	313 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR10S1	Q8NGN2	331 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR13C9	Q8NGT0	318 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR6K6	Q8NGW6	343 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR4X1	Q8NH49	305 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	KLF14	Q8TD94	323 aa	Predicted RBP	4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	FAM216A	Q8WUB2	273 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	MOB3A	Q96BX8	217 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	LYZL4	Q96KX0	146 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	C4orf45	Q96LM5	186 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	NUDT16L1	Q9BRJ7	211 aa	Known RBP	4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	PIMREG	Q9BSJ6	248 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	CABLES2	Q9BTV7	478 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	PARD6G	Q9BYG4	376 aa	Predicted RBP	4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	RAB1B	Q9H0U4	201 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	TAAR3P	Q9P1P4	343 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	AK3	Q9UIJ7	227 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	IKZF2	Q9UKS7	526 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	C14orf166	Q9Y224	244 aa	Known RBP	4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	RBM7	Q9Y580	266 aa	Known RBP	4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	TMEM14A	Q9Y6G1	99 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	WSB1	Q9Y6I7	421 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	CUBN	O60494	3623 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	SVEP1	Q4LDE5	3571 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026		A0A1B0GU03	582 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	LRP5L	A4QPB2	252 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	C5orf63	A6NC05	138 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	FAM90A8P	A6NJQ4	464 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	ZNF727	A8MUV8	499 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026		H0YL77	283 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	HSD17B6	O14756	317 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	CD5L	O43866	347 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	MMP23A	O75900	390 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	IGHV1-46	P01743	117 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	FAM90A13P	P0C7W8	464 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	FAM90A24P	P0C7X0	464 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	IGHV4-31	P0DP07	118 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	ADRA2C	P18825	462 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	FUT3	P21217	361 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	USF1	P22415	310 aa	Predicted RBP	4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	COL8A2	P25067	703 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	OTX1	P32242	354 aa	Predicted RBP	4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	GUCA1A	P43080	201 aa	Predicted RBP	4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	HNRNPA3	P51991	378 aa	Known RBP	4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	TPPP2	P59282	170 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	TAS2R46	P59540	309 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	PSG7	Q13046	419 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	SLC9A3R2	Q15599	337 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	PCK2	Q16822	640 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	C2orf76	Q3KRA6	126 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	ZNF718	Q3SXZ3	478 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	ANXA2R	Q3ZCQ2	193 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	TMEM41B	Q5BJD5	291 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	TOMM20L	Q6UXN7	152 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	TMEM182	Q6ZP80	229 aa	Predicted RBP	4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026		Q6ZR03	302 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	HOGA1	Q86XE5	327 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	FAM219A	Q8IW50	185 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	GBGT1	Q8N5D6	347 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	RFLNB	Q8N5W9	214 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR4D6	Q8NGJ1	314 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR1F12	Q8NHA8	337 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	FGGY	Q96C11	551 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	TBX15	Q96SF7	602 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	IMMP2L	Q96T52	175 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	SCRT1	Q9BWW7	348 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	KRTAP2-2	Q9BYT5	123 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	RBKS	Q9H477	322 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	WDR76	Q9H967	626 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	HSPB7	Q9UBY9	170 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	SLC7A11	Q9UPY5	501 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	DHDH	Q9UQ10	334 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	POLR1D	Q9Y2S0	133 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	MTOR	P42345	2549 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	DYSF	O75923	2080 aa		4.05	□□□□□ -1.76
CSMD3-208	ENST00000497026	TRAV30	A0A087WSZ9	112 aa		4.04	□□□□□ -1.76
CSMD3-208	ENST00000497026	MAP1LC3B2	A6NCE7	125 aa		4.04	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR4C45	A6NMZ5	311 aa		4.04	□□□□□ -1.76
CSMD3-208	ENST00000497026	WNT9B	O14905	357 aa		4.04	□□□□□ -1.76
CSMD3-208	ENST00000497026	HLA-DQA2	P01906	255 aa		4.04	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR5G3	P0C626	314 aa		4.04	□□□□□ -1.76
CSMD3-208	ENST00000497026	SELE	P16581	610 aa		4.04	□□□□□ -1.76
CSMD3-208	ENST00000497026	KITLG	P21583	273 aa		4.04	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms