RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 IFITM10A6NMD0 228 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 CTSSP25774 331 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 OR4D5Q8NGN0 318 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 VSIRQ9H7M9 311 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 SLC25A10Q9UBX3 287 aaPredicted RBP13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 PPIAL4EA0A075B759 164 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 ODAMA1E959 279 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 C1QTNF9BB2RNN3 333 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 PPIAL4DF5H284 164 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 RBP4P02753 201 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 PPIAL4FP0DN26 164 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 NPY1RP25929 384 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 ZNF137PP52743 207 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 DNM1P46Q6ZS02 220 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 BPIFA4PQ86YQ2 179 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 TMEM242Q9NWH2 141 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 PPIAL4AQ9Y536 164 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 CD33P20138 364 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 SSTR5P35346 364 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 KIR2DS2P43631 304 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 PPOXP50336 477 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 ERASQ7Z444 233 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 GGNQ86UU5 652 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 RAB1CQ92928 201 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 GAGE10A6NGK3 116 aa13.77□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM27E3Q08E93 113 aa13.77□□□□□ -0.2
CCDC88B-209ENST00000494080 PSG7Q13046 419 aa13.77□□□□□ -0.2
CCDC88B-209ENST00000494080 IBA57Q5T440 356 aaKnown RBP13.77□□□□□ -0.2
CCDC88B-209ENST00000494080 SSX8Q7RTT4 187 aa13.77□□□□□ -0.2
CCDC88B-209ENST00000494080 BCL2L2Q92843 193 aaPredicted RBP13.77□□□□□ -0.2
CCDC88B-209ENST00000494080 LSM10Q969L4 123 aaKnown RBP13.77□□□□□ -0.2
CCDC88B-209ENST00000494080 RAB1BQ9H0U4 201 aa13.77□□□□□ -0.2
CCDC88B-209ENST00000494080 A0A1B0GW64 132 aa13.77□□□□□ -0.21
CCDC88B-209ENST00000494080 TCTAP57738 103 aa13.77□□□□□ -0.21
CCDC88B-209ENST00000494080 TNXAQ16473 311 aa13.77□□□□□ -0.21
CCDC88B-209ENST00000494080 OR2T6Q8NHC8 308 aa13.77□□□□□ -0.21
CCDC88B-209ENST00000494080 LAMTOR2Q9Y2Q5 125 aa13.77□□□□□ -0.21
CCDC88B-209ENST00000494080 IGHV1-2P23083 117 aa13.77□□□□□ -0.21
CCDC88B-209ENST00000494080 ATP5G3P48201 142 aa13.77□□□□□ -0.21
CCDC88B-209ENST00000494080 ID3Q02535 119 aa13.77□□□□□ -0.21
CCDC88B-209ENST00000494080 ZNRF1Q8ND25 227 aa13.77□□□□□ -0.21
CCDC88B-209ENST00000494080 ALKBH7Q9BT30 221 aaPredicted RBP13.77□□□□□ -0.21
CCDC88B-209ENST00000494080 ASCL3Q9NQ33 180 aa13.77□□□□□ -0.21
CCDC88B-209ENST00000494080 TMEM56-RWDD3S4R434 201 aa13.77□□□□□ -0.21
CCDC88B-209ENST00000494080 RELQ04864 619 aaPredicted RBP13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 NPVFQ9HCQ7 196 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 FAM90A26D6RGX4 464 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 SMPD2O60906 423 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 C1QTNF9P0C862 333 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 PRRX1P54821 245 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 FAM216AQ8WUB2 273 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 TMEM171Q8WVE6 324 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 DOCK11Q5JSL3 2073 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 IGKV1D-13A0A0B4J2D9 117 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 IGKV1-13P0DP09 117 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 UQCRFS1P47985 274 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 C9orf106Q8NAJ2 232 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 ORM2P19652 201 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 QRFPP83859 136 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 C1orf194Q5T5A4 169 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 C12orf54Q6X4T0 127 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 NABP1Q96AH0 204 aa13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 MRPS18CQ9Y3D5 142 aaKnown RBP13.76□□□□□ -0.21
CCDC88B-209ENST00000494080 PGPEP1LA6NFU8 196 aa13.75□□□□□ -0.21
CCDC88B-209ENST00000494080 MMDQ15546 238 aa13.75□□□□□ -0.21
CCDC88B-209ENST00000494080 Q5PR19 223 aa13.75□□□□□ -0.21
CCDC88B-209ENST00000494080 LRTM2Q8N967 370 aa13.75□□□□□ -0.21
CCDC88B-209ENST00000494080 CRYBB3P26998 211 aa13.75□□□□□ -0.21
CCDC88B-209ENST00000494080 FAM201AQ5SY85 155 aa13.75□□□□□ -0.21
CCDC88B-209ENST00000494080 FAM19A2Q8N3H0 131 aa13.75□□□□□ -0.21
CCDC88B-209ENST00000494080 ISLRO14498 428 aa13.75□□□□□ -0.21
CCDC88B-209ENST00000494080 MPDU1O75352 247 aa13.75□□□□□ -0.21
CCDC88B-209ENST00000494080 CCL1P22362 96 aa13.75□□□□□ -0.21
CCDC88B-209ENST00000494080 TMEM256Q8N2U0 113 aa13.75□□□□□ -0.21
CCDC88B-209ENST00000494080 FLYWCH2Q96CP2 140 aaKnown RBP13.75□□□□□ -0.21
CCDC88B-209ENST00000494080 C19orf35Q6ZS72 473 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 GBGT1Q8N5D6 347 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 IGHV3-72A0A0B4J1Y9 119 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 J3QR06 171 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 TFF3Q07654 80 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 DOLPP1Q86YN1 238 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 DRAM1Q8N682 238 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 NHLRC2Q8NBF2 726 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 VSTM2AQ8TAG5 236 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 PLSCR2Q9NRY7 297 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 CDX4O14627 284 aaPredicted RBP13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 S1PR2O95136 353 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 ADMP35318 185 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 ARL16Q0P5N6 197 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 NRN1LQ496H8 165 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 C1orf174Q8IYL3 243 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 SNHG12Q9BXW3 62 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 GP6Q9HCN6 339 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 INSIG2Q9Y5U4 225 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 A6NDN8 102 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 NAPSAO96009 420 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 SLC25A34Q6PIV7 304 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 GATAD1Q8WUU5 269 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 NPCDR1Q9BY65 106 aa13.74□□□□□ -0.21
CCDC88B-209ENST00000494080 FAM87AP0C7U9 286 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 126.3 ms