RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 SLC25A22Q9H936 323 aa4.82□□□□□ -1.64
VPS41-214ENST00000490924 NPVFQ9HCQ7 196 aa4.82□□□□□ -1.64
VPS41-214ENST00000490924 TMEM167BQ9NRX6 74 aa4.82□□□□□ -1.64
VPS41-214ENST00000490924 ELOVL5Q9NYP7 299 aa4.82□□□□□ -1.64
VPS41-214ENST00000490924 FBXL7Q9UJT9 491 aa4.82□□□□□ -1.64
VPS41-214ENST00000490924 RALYQ9UKM9 306 aaKnown RBP4.82□□□□□ -1.64
VPS41-214ENST00000490924 FOXA2Q9Y261 457 aaPredicted RBP4.82□□□□□ -1.64
VPS41-214ENST00000490924 CHD8Q9HCK8 2581 aa4.82□□□□□ -1.64
VPS41-214ENST00000490924 COL27A1Q8IZC6 1860 aaPredicted RBP4.81□□□□□ -1.64
VPS41-214ENST00000490924 MED12Q93074 2177 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 PKD1L2Q7Z442 2459 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 TRGV5A0A0B4J1U4 118 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 MDFIC2A0A1B0GVS7 189 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 C17orf98A8MV24 154 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 SRRM5B3KS81 715 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 M0R143 59 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 HSPB6O14558 160 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 MGST3O14880 152 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 RAMP3O60896 148 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 IGHV3-9P01782 118 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 IL6RP08887 468 aaPredicted RBP4.81□□□□□ -1.64
VPS41-214ENST00000490924 G6PCP35575 357 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 TPPP2P59282 170 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 NUTF2P61970 127 aaKnown RBP4.81□□□□□ -1.64
VPS41-214ENST00000490924 RPL30P62888 115 aaKnown RBP4.81□□□□□ -1.64
VPS41-214ENST00000490924 ARG2P78540 354 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 PSG7Q13046 419 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 ZNF718Q3SXZ3 478 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 OR10J3Q5JRS4 329 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 TEX38Q6PEX7 206 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 WDR82Q6UXN9 313 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 TEX43Q6ZNM6 134 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 PQLC2Q6ZP29 291 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 SSX8Q7RTT4 187 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 C11orf53Q8IXP5 236 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 OR1L1Q8NH94 360 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 KLF14Q8TD94 323 aaPredicted RBP4.81□□□□□ -1.64
VPS41-214ENST00000490924 DDB2Q92466 427 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 ZNF488Q96MN9 340 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 PCGF1Q9BSM1 259 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 QTRT1Q9BXR0 403 aaKnown RBP4.81□□□□□ -1.64
VPS41-214ENST00000490924 FAM234AQ9H0X4 552 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 OSTCQ9NRP0 149 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 TMEM14BQ9NUH8 114 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 FKBP11Q9NYL4 201 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 IL36BQ9NZH7 164 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 PRNDQ9UKY0 176 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 SLC45A2Q9UMX9 530 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 TRAPPC1Q9Y5R8 145 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 BAHCC1Q9P281 2608 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 VPS13AQ96RL7 3174 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 PI4KAP42356 2102 aa4.81□□□□□ -1.64
VPS41-214ENST00000490924 SDK2Q58EX2 2172 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 DMXL1Q9Y485 3027 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 TRBV23-1A0A0A0MS06 115 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 A0A1W2PRE2 83 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 C15orf61A6NNL5 157 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 AQP7O14520 342 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 CD55P08174 381 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 CGB3P0DN86 165 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 CGB7P0DN87 165 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 CCL2P13500 99 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 NPPCP23582 126 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 GPR12P47775 334 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 GABRA2P47869 451 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 THBS3P49746 956 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 FOXG1P55316 489 aaPredicted RBP4.8□□□□□ -1.64
VPS41-214ENST00000490924 TAS2R45P59539 299 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 HSPE1P61604 102 aaKnown RBP4.8□□□□□ -1.64
VPS41-214ENST00000490924 GNB1P62873 340 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 FOXF2Q12947 444 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 TMEM183BQ1AE95 376 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 SPATA46Q5T0L3 261 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 FAM71F2Q6NXP2 309 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 IGFL2Q6UWQ7 119 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 C5orf24Q7Z6I8 188 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 OR4A16Q8NH70 328 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 SGMS2Q8NHU3 365 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 SLC25A40Q8TBP6 338 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 WIPF2Q8TF74 440 aaPredicted RBP4.8□□□□□ -1.64
VPS41-214ENST00000490924 CACNG8Q8WXS5 425 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 NEUROG1Q92886 237 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 C5orf30Q96GV9 206 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 GPHA2Q96T91 129 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 CHRDL1Q9BU40 450 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 GGTLC1Q9BX51 225 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 MRPL32Q9BYC8 188 aaKnown RBP4.8□□□□□ -1.64
VPS41-214ENST00000490924 COMMD5Q9GZQ3 224 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 TMEM106BQ9NUM4 274 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 DKK4Q9UBT3 224 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 CLN8Q9UBY8 286 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 IL19Q9UHD0 177 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 NAGKQ9UJ70 344 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 FUT9Q9Y231 359 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 CNTRLQ7Z7A1 2325 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 SPTBN4Q9H254 2564 aa4.8□□□□□ -1.64
VPS41-214ENST00000490924 C20orf202A1L168 122 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 LINC00473A8K010 186 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 M0R296 226 aa4.79□□□□□ -1.64
VPS41-214ENST00000490924 ISLRO14498 428 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms