RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 J3QLI3 93 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 SDHDO14521 159 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 SH2D1BO14796 132 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TAX1BP3O14907 124 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 HMGB3O15347 200 aaKnown RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 RS1O15537 224 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 HCRTO43612 131 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OR1F1O43749 312 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 RAMP1O60894 148 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 CLDN11O75508 207 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 DUSP14O95147 198 aaKnown RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 LYPD3O95274 346 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 SYNGR4O95473 234 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM50AO95807 157 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 CST1P01037 141 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 IFNA1P01562 189 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 HLA-HP01893 362 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OPN1SWP03999 348 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 CD74P04233 296 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 RHOCP08134 193 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 WNT2P09544 360 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ELK1P19419 428 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TCN2P20062 427 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 PMCHP20382 165 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 NTF3P20783 257 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 F2RP25116 425 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 CD1CP29017 333 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 IMPA1P29218 277 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 RPL22P35268 128 aaKnown RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ADRA1AP35348 466 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 GLRXP35754 106 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ARL2P36404 184 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 SNCAP37840 140 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OPRD1P41143 372 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 CDKN2BP42772 138 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TNFRSF4P43489 277 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 LPAR6P43657 344 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 XCR1P46094 333 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 CX3CR1P49238 355 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF133P52736 654 aaPredicted RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 RHOAP61586 193 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TIMM10P62072 90 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 RPS4XP62701 263 aaKnown RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 PSG9Q00887 426 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 MEF2BQ02080 365 aaPredicted RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OC90Q02509 493 aaPredicted RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 PPP1R8Q12972 351 aaKnown RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF154Q13106 437 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 PDE7AQ13946 482 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ATXN7L3Q14CW9 347 aaPredicted RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 PDGFRLQ15198 375 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OR1Q1Q15612 314 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM183BQ1AE95 376 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 DCAF4L1Q3SXM0 396 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 KRTAP13-3Q3SY46 172 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM176BQ3YBM2 270 aaPredicted RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TIGITQ495A1 244 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF658BQ4V348 819 aaPredicted RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TP53I3Q53FA7 332 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 C2orf83Q53S99 150 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 MS4A13Q5J8X5 152 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 CLEC12AQ5QGZ9 265 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TIMM23BQ5SRD1 257 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF684Q5T5D7 378 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ARL9Q6T311 187 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TIFABQ6ZNK6 161 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 Q6ZPB1 254 aaPredicted RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 GTF2H5Q6ZYL4 71 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 NEGR1Q7Z3B1 354 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 KRTAP11-1Q8IUC1 163 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 HIST2H2ABQ8IUE6 130 aaPredicted RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 STHQ8IWL8 128 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 BLIDQ8IZY5 108 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 LRRC75A-AS1Q8N1F1 130 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 SYS1Q8N2H4 156 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TOMM5Q8N4H5 51 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 KCNRGQ8N5I3 272 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF709Q8N972 641 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 GATSQ8NAP1 163 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OR2T33Q8NG76 320 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 GPR32P1Q8NGA4 272 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OR4D11Q8NGI4 311 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OR9G4Q8NGQ1 327 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OR1L4Q8NGR5 311 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OR4X1Q8NH49 305 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OR52P1PQ8NH57 321 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OR5W2Q8NH69 310 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OR4A16Q8NH70 328 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 MFSD8Q8NHS3 518 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 RFESDQ8TAC1 157 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 NEIL3Q8TAT5 605 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF418Q8TF45 676 aaPredicted RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 Q8WTZ3 238 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM106AQ96A25 262 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 APOBEC3DQ96AK3 386 aaPredicted RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 FAM131CQ96AQ9 280 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 FGGYQ96C11 551 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 FLYWCH2Q96CP2 140 aaKnown RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 PYURFQ96I23 114 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 BTF3L4Q96K17 158 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms