RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 IGLC7A0M8Q6 106 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 DBX1A6NMT0 343 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 MARCH11A6NNE9 402 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 NPIPB5A8MRT5 1133 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 KRASP01116 189 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 IGKV1-39P01597 117 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 IGHV3-23P01764 117 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 IGKV1D-39P04432 117 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 PPP5CP53041 499 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 EXOSC2Q13868 293 aaKnown RBP10.65□□□□□ -0.7
SYNE1-226ENST00000488376 RNASE10Q5GAN6 216 aaKnown RBP10.65□□□□□ -0.7
SYNE1-226ENST00000488376 LHFPL1Q86WI0 220 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 CMTM1Q8IZ96 169 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 OR10W1Q8NGF6 305 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 OR4A5Q8NH83 315 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 CD300LFQ8TDQ1 290 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 DIRAS2Q96HU8 199 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 FANCD2OSQ96PS1 177 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 C6orf62Q9GZU0 229 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-226ENST00000488376 COMMD9Q9P000 198 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 DMRT1Q9Y5R6 373 aa10.65□□□□□ -0.7
SYNE1-226ENST00000488376 GABARAPH6UMI1 98 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 BMPR1BO00238 502 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 NDUFB8O95169 186 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 CD74P04233 296 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 PSMB6P28072 239 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 UCP3P55916 312 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 SYNJ2BPP57105 145 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 ATP5G2Q06055 141 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 KLF5Q13887 457 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-226ENST00000488376 IL18Q14116 193 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 C15orf32Q32M92 178 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 IL34Q6ZMJ4 242 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 SLC38A6Q8IZM9 456 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 TMEM229BQ8NBD8 167 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 SMIM4Q8WVI0 70 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 BORCS5Q969J3 196 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 USMG5Q96IX5 58 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 RBM38Q9H0Z9 239 aaKnown RBP10.64□□□□□ -0.71
SYNE1-226ENST00000488376 RANGRFQ9HD47 186 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-226ENST00000488376 PEF1Q9UBV8 284 aaKnown RBP10.64□□□□□ -0.71
SYNE1-226ENST00000488376 ZNF257Q9Y2Q1 563 aa10.64□□□□□ -0.71
SYNE1-226ENST00000488376 TEX50A0A1B0GTY4 177 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 FAM223BA6NKX1 122 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 PPP5D1E7EU14 171 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 NOL3O60936 208 aaKnown RBP10.63□□□□□ -0.71
SYNE1-226ENST00000488376 TPPPO94811 219 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 RAB3DO95716 219 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 HLA-AP01891 365 aaKnown RBP10.63□□□□□ -0.71
SYNE1-226ENST00000488376 IFNA6P05013 189 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 CRYGCP07315 174 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 PGAM2P15259 253 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 SPNP16150 400 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 CTRB1P17538 263 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 TNFSF8P32971 234 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 IZUMO4Q1ZYL8 232 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 CTRB2Q6GPI1 263 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 STEAP1BQ6NZ63 245 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 FAM223AQ8IWN6 122 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 NECAP1Q8NC96 275 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 NXF2Q9GZY0 626 aaKnown RBP10.63□□□□□ -0.71
SYNE1-226ENST00000488376 FBXL7Q9UJT9 491 aa10.63□□□□□ -0.71
SYNE1-226ENST00000488376 DPPA5A6NC42 116 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 EDN2P20800 178 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 TAS2R19P59542 299 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 ERVK-16P61578 105 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 WT1-ASQ06250 92 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 SCGB2B2Q4G0G5 96 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 LPCAT3Q6P1A2 487 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 ZNF429Q86V71 674 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 ARRDC1Q8N5I2 433 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 OR13C8Q8NGS7 320 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 MCFD2Q8NI22 146 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 MARCH1Q8TCQ1 289 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 SEC22AQ96IW7 307 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 CCDC140Q96MF4 163 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 TP53RKQ96S44 253 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 SOSTQ9BQB4 213 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 AIFM2Q9BRQ8 373 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 COMMD5Q9GZQ3 224 aa10.62□□□□□ -0.71
SYNE1-226ENST00000488376 ZNF256Q9Y2P7 627 aaPredicted RBP10.62□□□□□ -0.71
SYNE1-226ENST00000488376 LSM4Q9Y4Z0 139 aaKnown RBP10.62□□□□□ -0.71
SYNE1-226ENST00000488376 IGLV11-55A0A075B6I3 123 aa10.61□□□□□ -0.71
SYNE1-226ENST00000488376 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.61□□□□□ -0.71
SYNE1-226ENST00000488376 MFSD2BA6NFX1 497 aa10.61□□□□□ -0.71
SYNE1-226ENST00000488376 CTDSPLO15194 276 aa10.61□□□□□ -0.71
SYNE1-226ENST00000488376 LY86O95711 162 aa10.61□□□□□ -0.71
SYNE1-226ENST00000488376 TBPP20226 339 aa10.61□□□□□ -0.71
SYNE1-226ENST00000488376 ZP3P21754 424 aa10.61□□□□□ -0.71
SYNE1-226ENST00000488376 INSL3P51460 131 aa10.61□□□□□ -0.71
SYNE1-226ENST00000488376 MFAP2P55001 183 aa10.61□□□□□ -0.71
SYNE1-226ENST00000488376 PIGPP57054 158 aa10.61□□□□□ -0.71
SYNE1-226ENST00000488376 SLC25A42Q86VD7 318 aa10.61□□□□□ -0.71
SYNE1-226ENST00000488376 OR4C16Q8NGL9 310 aa10.61□□□□□ -0.71
SYNE1-226ENST00000488376 C15orf40Q8WUR7 153 aa10.61□□□□□ -0.71
SYNE1-226ENST00000488376 HINT2Q9BX68 163 aa10.61□□□□□ -0.71
SYNE1-226ENST00000488376 QTRT1Q9BXR0 403 aaKnown RBP10.61□□□□□ -0.71
SYNE1-226ENST00000488376 CCDC160A6NGH7 325 aa10.6□□□□□ -0.71
SYNE1-226ENST00000488376 IGKV1-5P01602 117 aa10.6□□□□□ -0.71
SYNE1-226ENST00000488376 RND3P61587 244 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms