RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 A0A0U1RQK1 487 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 KBTBD11-OT1A0A1B0GTJ5 212 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 SCO2A0A1W2PP80 73 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 ZNF320A2RRD8 509 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 FOXH1O75593 365 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 CXorf1O96002 111 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 IL6RP08887 468 aaPredicted RBP14.76□□□□□ -0.05
VIM-206ENST00000487938 MRPS11P82912 194 aaKnown RBP14.76□□□□□ -0.05
VIM-206ENST00000487938 DEFA6Q01524 100 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 TMEM249Q2WGJ8 235 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 CCL13Q99616 98 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 GCM1Q9NP62 436 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 ZMAT5Q9UDW3 170 aaKnown RBP14.76□□□□□ -0.05
VIM-206ENST00000487938 FAM215AQ9Y5M1 114 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 F6UZH7 168 aa14.75□□□□□ -0.05
VIM-206ENST00000487938 TMPRSS2O15393 492 aa14.75□□□□□ -0.05
VIM-206ENST00000487938 CA2P00918 260 aa14.75□□□□□ -0.05
VIM-206ENST00000487938 IL3RAP26951 378 aa14.75□□□□□ -0.05
VIM-206ENST00000487938 RAB7AP51149 207 aa14.75□□□□□ -0.05
VIM-206ENST00000487938 IGF2-ASQ6U949 168 aa14.75□□□□□ -0.05
VIM-206ENST00000487938 SNRNP40Q96DI7 357 aaKnown RBP14.75□□□□□ -0.05
VIM-206ENST00000487938 ZNRD1Q9P1U0 126 aa14.75□□□□□ -0.05
VIM-206ENST00000487938 LSM4Q9Y4Z0 139 aaKnown RBP14.75□□□□□ -0.05
VIM-206ENST00000487938 YTHDF2Q9Y5A9 579 aaKnown RBP14.75□□□□□ -0.05
VIM-206ENST00000487938 MMP23AO75900 390 aa14.75□□□□□ -0.05
VIM-206ENST00000487938 NPY1RP25929 384 aa14.75□□□□□ -0.05
VIM-206ENST00000487938 GPX4P36969 197 aaPredicted RBP14.75□□□□□ -0.05
VIM-206ENST00000487938 HSPE1P61604 102 aaKnown RBP14.75□□□□□ -0.05
VIM-206ENST00000487938 CISD2Q8N5K1 135 aaKnown RBP14.75□□□□□ -0.05
VIM-206ENST00000487938 SLC24A4Q8NFF2 622 aa14.75□□□□□ -0.05
VIM-206ENST00000487938 RNF7Q9UBF6 113 aa14.75□□□□□ -0.05
VIM-206ENST00000487938 YLPM1P49750 1951 aaKnown RBP14.74□□□□□ -0.05
VIM-206ENST00000487938 TRGV10A0A0A0MS01 117 aa14.74□□□□□ -0.05
VIM-206ENST00000487938 TRGV8A0A0C4DH27 118 aa14.74□□□□□ -0.05
VIM-206ENST00000487938 EFNB3Q15768 340 aa14.74□□□□□ -0.05
VIM-206ENST00000487938 TEPPQ6URK8 271 aa14.74□□□□□ -0.05
VIM-206ENST00000487938 UNQ6494/PRO21346Q6UXR6 183 aa14.74□□□□□ -0.05
VIM-206ENST00000487938 STPG3Q8N7X2 389 aa14.74□□□□□ -0.05
VIM-206ENST00000487938 FAM122AQ96E09 287 aa14.74□□□□□ -0.05
VIM-206ENST00000487938 ENY2Q9NPA8 101 aa14.74□□□□□ -0.05
VIM-206ENST00000487938 IDI2-AS1Q9NZ38 188 aa14.74□□□□□ -0.05
VIM-206ENST00000487938 CNOT1A5YKK6 2376 aaKnown RBP14.74□□□□□ -0.05
VIM-206ENST00000487938 GATCO43716 136 aaKnown RBP14.73□□□□□ -0.05
VIM-206ENST00000487938 GZMBP10144 247 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 TNFAIP6P98066 277 aaPredicted RBP14.73□□□□□ -0.05
VIM-206ENST00000487938 FAM27E3Q08E93 113 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 TCF23Q7RTU1 214 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 FAM216BQ8N7L0 139 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 OCC1Q8TAD7 63 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 ACY3Q96HD9 319 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 SFRP2Q96HF1 295 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 TMEM14BQ9NUH8 114 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 DCAF16Q9NXF7 216 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 IGLV3-9A0A075B6K5 115 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 CEACAM4O75871 244 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 TYMSP04818 313 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 IGFBP2P18065 325 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 THBS3P49746 956 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 JOSD1Q15040 202 aaPredicted RBP14.73□□□□□ -0.05
VIM-206ENST00000487938 COA6Q5JTJ3 125 aaKnown RBP14.73□□□□□ -0.05
VIM-206ENST00000487938 FAM216AQ8WUB2 273 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 WFIKKN1Q96NZ8 548 aa14.73□□□□□ -0.05
VIM-206ENST00000487938 FOXA2Q9Y261 457 aaPredicted RBP14.73□□□□□ -0.05
VIM-206ENST00000487938 DVL1O14640 695 aa14.72□□□□□ -0.05
VIM-206ENST00000487938 IGHV1-46P01743 117 aa14.72□□□□□ -0.05
VIM-206ENST00000487938 GCHFRP30047 84 aa14.72□□□□□ -0.05
VIM-206ENST00000487938 SGMS2Q8NHU3 365 aa14.72□□□□□ -0.05
VIM-206ENST00000487938 FAM222BQ8WU58 562 aa14.72□□□□□ -0.05
VIM-206ENST00000487938 ZCCHC14Q8WYQ9 949 aaKnown RBP14.72□□□□□ -0.05
VIM-206ENST00000487938 GAFA1Q96PS6 74 aa14.72□□□□□ -0.05
VIM-206ENST00000487938 OR51B2Q9Y5P1 312 aa14.72□□□□□ -0.05
VIM-206ENST00000487938 TRAPPC1Q9Y5R8 145 aa14.72□□□□□ -0.05
VIM-206ENST00000487938 DSCAML1Q8TD84 2053 aa14.72□□□□□ -0.05
VIM-206ENST00000487938 ACTL6BO94805 426 aa14.72□□□□□ -0.05
VIM-206ENST00000487938 PKIAP61925 76 aa14.72□□□□□ -0.05
VIM-206ENST00000487938 OR4P4Q8NGL7 312 aa14.72□□□□□ -0.05
VIM-206ENST00000487938 C14orf144Q96I85 54 aa14.72□□□□□ -0.05
VIM-206ENST00000487938 MGAQ8IWI9 3026 aa14.72□□□□□ -0.05
VIM-206ENST00000487938 RAI1Q7Z5J4 1906 aaPredicted RBP14.71□□□□□ -0.05
VIM-206ENST00000487938 ZNF318Q5VUA4 2279 aa14.71□□□□□ -0.05
VIM-206ENST00000487938 MDFIC2A0A1B0GVS7 189 aa14.71□□□□□ -0.05
VIM-206ENST00000487938 ITGB1BP1O14713 200 aa14.71□□□□□ -0.05
VIM-206ENST00000487938 CD99P14209 185 aa14.71□□□□□ -0.05
VIM-206ENST00000487938 PDLIM4P50479 330 aa14.71□□□□□ -0.05
VIM-206ENST00000487938 DNLZQ5SXM8 178 aa14.71□□□□□ -0.05
VIM-206ENST00000487938 STUMQ69YW2 141 aa14.71□□□□□ -0.05
VIM-206ENST00000487938 MOB3BQ86TA1 216 aa14.71□□□□□ -0.05
VIM-206ENST00000487938 ZNF439Q8NDP4 499 aa14.71□□□□□ -0.05
VIM-206ENST00000487938 RNASEH2CQ8TDP1 164 aaKnown RBP14.71□□□□□ -0.05
VIM-206ENST00000487938 ZNF705GA8MUZ8 300 aaPredicted RBP14.71□□□□□ -0.06
VIM-206ENST00000487938 K7EM74 188 aa14.71□□□□□ -0.06
VIM-206ENST00000487938 IGKV1-16P04430 117 aa14.71□□□□□ -0.06
VIM-206ENST00000487938 RPL15P61313 204 aaKnown RBP14.71□□□□□ -0.06
VIM-206ENST00000487938 RHOBP62745 196 aa14.71□□□□□ -0.06
VIM-206ENST00000487938 LCN2P80188 198 aa14.71□□□□□ -0.06
VIM-206ENST00000487938 TMEM144Q7Z5S9 345 aa14.71□□□□□ -0.06
VIM-206ENST00000487938 OR5R1Q8NH85 324 aa14.71□□□□□ -0.06
VIM-206ENST00000487938 A0A1B0GUS0 222 aa14.7□□□□□ -0.06
VIM-206ENST00000487938 SRRM4A7MD48 611 aaKnown RBP14.7□□□□□ -0.06
VIM-206ENST00000487938 J3QR06 171 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms