RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 PUSL1Q8N0Z8 303 aaKnown RBP11.45□□□□□ -0.58
CUX1-209ENST00000487284 TMEM217Q8N7C4 229 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 OR4C13Q8NGP0 309 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 LHX4Q969G2 390 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 FLYWCH2Q96CP2 140 aaKnown RBP11.45□□□□□ -0.58
CUX1-209ENST00000487284 CXorf58Q96LI9 332 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 HARBI1Q96MB7 349 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 OR4C12Q96R67 309 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 ATP5SQ99766 215 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 HIF1ANQ9NWT6 349 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 TCF19Q9Y242 345 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 CSPG4Q6UVK1 2322 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 TRAV20A0A0B4J274 112 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 ODF3BA8MYP8 253 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 DFFBO76075 338 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 IFNA17P01571 189 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 SAA1P0DJI8 122 aaPredicted RBP11.45□□□□□ -0.58
CUX1-209ENST00000487284 SPP1P10451 314 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 HBG1P69891 147 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 HBG2P69892 147 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 PAX8Q06710 450 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 ARL16Q0P5N6 197 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 HCP5Q6MZN7 132 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 VMO1Q7Z5L0 202 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 COMMD7Q86VX2 200 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 RNF141Q8WVD5 230 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 RBMXL1Q96E39 390 aaKnown RBP11.45□□□□□ -0.58
CUX1-209ENST00000487284 NUP50Q9UKX7 468 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 PRNDQ9UKY0 176 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 ZNF257Q9Y2Q1 563 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 STRAPQ9Y3F4 350 aaKnown RBP11.45□□□□□ -0.58
CUX1-209ENST00000487284 IGHV1-3A0A0C4DH29 117 aa11.44□□□□□ -0.58
CUX1-209ENST00000487284 FBXO24O75426 580 aa11.44□□□□□ -0.58
CUX1-209ENST00000487284 TOX4O94842 621 aa11.44□□□□□ -0.58
CUX1-209ENST00000487284 TGFAP01135 160 aa11.44□□□□□ -0.58
CUX1-209ENST00000487284 VDAC2P45880 294 aaPredicted RBP11.44□□□□□ -0.58
CUX1-209ENST00000487284 SULT1A2P50226 295 aa11.44□□□□□ -0.58
CUX1-209ENST00000487284 HSPE1P61604 102 aaKnown RBP11.44□□□□□ -0.58
CUX1-209ENST00000487284 KLRD1Q13241 179 aa11.44□□□□□ -0.58
CUX1-209ENST00000487284 SPINK9Q5DT21 86 aa11.44□□□□□ -0.58
CUX1-209ENST00000487284 TBX15Q96SF7 602 aa11.44□□□□□ -0.58
CUX1-209ENST00000487284 MS4A7Q9GZW8 240 aaPredicted RBP11.44□□□□□ -0.58
CUX1-209ENST00000487284 PMS2P5A8MQ11 134 aa11.43□□□□□ -0.58
CUX1-209ENST00000487284 KBTBD11O94819 623 aa11.43□□□□□ -0.58
CUX1-209ENST00000487284 SCAF4O95104 1147 aaKnown RBP11.43□□□□□ -0.58
CUX1-209ENST00000487284 IGLV2-23P01705 113 aa11.43□□□□□ -0.58
CUX1-209ENST00000487284 HSD17B11Q8NBQ5 300 aa11.43□□□□□ -0.58
CUX1-209ENST00000487284 OR4A5Q8NH83 315 aa11.43□□□□□ -0.58
CUX1-209ENST00000487284 CLCC1Q96S66 551 aa11.43□□□□□ -0.58
CUX1-209ENST00000487284 PLA2G2EQ9NZK7 142 aa11.43□□□□□ -0.58
CUX1-209ENST00000487284 C15orf62A8K5M9 175 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 CYSRT1A8MQ03 144 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 FGF2P09038 288 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 HTR1DP28221 377 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 RPS16P62249 146 aaKnown RBP11.42□□□□□ -0.58
CUX1-209ENST00000487284 SLC38A11Q08AI6 406 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 LDLRAD2Q5SZI1 272 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 TPTE2P1Q5T6R2 138 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 VSTM2AQ8TAG5 236 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 TMEM167AQ8TBQ9 72 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 RPEQ96AT9 228 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 SAT2Q96F10 170 aaPredicted RBP11.42□□□□□ -0.58
CUX1-209ENST00000487284 CITED4Q96RK1 184 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 TSNAXQ99598 290 aaKnown RBP11.42□□□□□ -0.58
CUX1-209ENST00000487284 SH3BGRL3Q9H299 93 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 FKBP11Q9NYL4 201 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 PFDN2Q9UHV9 154 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 OR51B2Q9Y5P1 312 aa11.42□□□□□ -0.58
CUX1-209ENST00000487284 A0A1W2PPI3 338 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 RNASEK-C17orf49H0YIS7 233 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 HOXB4P17483 251 aaPredicted RBP11.41□□□□□ -0.58
CUX1-209ENST00000487284 ATP6V0CP27449 155 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 CEACAM3P40198 252 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 LGALS7P47929 136 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 CYB5R2Q6BCY4 276 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 PARD6GQ9BYG4 376 aaPredicted RBP11.41□□□□□ -0.58
CUX1-209ENST00000487284 HIPK2Q9H2X6 1198 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 C7orf69Q9H7B7 122 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 HEYLQ9NQ87 328 aaPredicted RBP11.41□□□□□ -0.58
CUX1-209ENST00000487284 DPM3Q9P2X0 92 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 MFSD2BA6NFX1 497 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 GATA3P23771 443 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 HOXA1P49639 335 aaPredicted RBP11.41□□□□□ -0.58
CUX1-209ENST00000487284 PRCDQ00LT1 54 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 ATP6V1FQ16864 119 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 OR8G2PQ6IF36 304 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 LILRB2Q8N423 598 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 OR5B3Q8NH48 314 aa11.41□□□□□ -0.58
CUX1-209ENST00000487284 GNPNAT1Q96EK6 184 aaPredicted RBP11.41□□□□□ -0.58
CUX1-209ENST00000487284 IGHV3-72A0A0B4J1Y9 119 aa11.4□□□□□ -0.58
CUX1-209ENST00000487284 TEX50A0A1B0GTY4 177 aa11.4□□□□□ -0.58
CUX1-209ENST00000487284 A0A1W2PRD5 423 aa11.4□□□□□ -0.58
CUX1-209ENST00000487284 A0A1W2PRF3 423 aa11.4□□□□□ -0.58
CUX1-209ENST00000487284 A0A1W2PRM7 423 aa11.4□□□□□ -0.58
CUX1-209ENST00000487284 ANKRD34BA5PLL1 514 aa11.4□□□□□ -0.58
CUX1-209ENST00000487284 ZNF705EA8MWA4 302 aaPredicted RBP11.4□□□□□ -0.58
CUX1-209ENST00000487284 AVPP01185 164 aa11.4□□□□□ -0.58
CUX1-209ENST00000487284 IFNA5P01569 189 aa11.4□□□□□ -0.58
CUX1-209ENST00000487284 MYOD1P15172 320 aa11.4□□□□□ -0.58
CUX1-209ENST00000487284 RPL8P62917 257 aaKnown RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms