RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 TMEM167BQ9NRX6 74 aa9.31□□□□□ -0.92
HDAC6-228ENST00000486227 SLC25A5P05141 298 aaKnown RBP9.3□□□□□ -0.92
HDAC6-228ENST00000486227 UBE2L3P68036 154 aaKnown RBP9.3□□□□□ -0.92
HDAC6-228ENST00000486227 LCN2P80188 198 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 NHLH1Q02575 133 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 DNLZQ5SXM8 178 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 SLC35E4Q6ICL7 350 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 DOPEY2Q9Y3R5 2298 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 PLXND1Q9Y4D7 1925 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 CADP27708 2225 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 DBX1A6NMT0 343 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 HTR1DP28221 377 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 FOXF2Q12947 444 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 LEMD1Q68G75 181 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 C19orf35Q6ZS72 473 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 FAM89BQ8N5H3 189 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 OR4X1Q8NH49 305 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 GTF3AQ92664 365 aaKnown RBP9.3□□□□□ -0.92
HDAC6-228ENST00000486227 OR4C12Q96R67 309 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 DMRTA2Q96SC8 542 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 DCTN5Q9BTE1 182 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 TMEM191AQ9H0A3 160 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 GSX1Q9H4S2 264 aaPredicted RBP9.3□□□□□ -0.92
HDAC6-228ENST00000486227 SDF2L1Q9HCN8 221 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 IDI2-AS1Q9NZ38 188 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 IGHV3-21A0A0B4J1V1 117 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 LIPFP07098 398 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 CD1BP29016 333 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 B3GALT5-AS1P59052 145 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 ICAM4Q14773 271 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 PSG5Q15238 335 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 OR1B1Q8NGR6 318 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 YTHDF2Q9Y5A9 579 aaKnown RBP9.3□□□□□ -0.92
HDAC6-228ENST00000486227 A0A1B0GW64 132 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 MARCH11A6NNE9 402 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 LDLRAD4O15165 306 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 CXorf1O96002 111 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 SPATA45Q537H7 98 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 C10orf91Q5T1B1 145 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 TEPPQ6URK8 271 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 RNF144BQ7Z419 303 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 RCC1LQ96I51 464 aaKnown RBP9.3□□□□□ -0.92
HDAC6-228ENST00000486227 C14orf144Q96I85 54 aa9.3□□□□□ -0.92
HDAC6-228ENST00000486227 IGKV1-12A0A0C4DH73 117 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 NDUFB4O95168 129 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 VENTXO95231 258 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 IGKV1D-12P01611 117 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 IGHV2-70P01814 119 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 OR1L4Q8NGR5 311 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 C2orf88Q9BSF0 95 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 TECRQ9NZ01 308 aaKnown RBP9.29□□□□□ -0.92
HDAC6-228ENST00000486227 JPT1Q9UK76 154 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 IQCF6A8MYZ5 107 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 TCL1AP56279 114 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 DYNLRB2Q8TF09 96 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 FAM168AQ92567 244 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 PNRC2Q9NPJ4 139 aaKnown RBP9.29□□□□□ -0.92
HDAC6-228ENST00000486227 RALYQ9UKM9 306 aaKnown RBP9.29□□□□□ -0.92
HDAC6-228ENST00000486227 DENND4CQ5VZ89 1909 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 KIAA2026Q5HYC2 2103 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 IGKV1D-8A0A087WSZ0 117 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 ZG16O60844 167 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 NBL1P41271 181 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 MST1LQ2TV78 715 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 VKORC1L1Q8N0U8 176 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 TMEM204Q9BSN7 226 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 TNFRSF9Q07011 255 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 WFIKKN1Q96NZ8 548 aa9.29□□□□□ -0.92
HDAC6-228ENST00000486227 WNT5AP41221 380 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 MDS2Q8NDY4 140 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 OR13A1Q8NGR1 328 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 TMEM106BQ9NUM4 274 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 TMEM140Q9NV12 185 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 TRBV24-1A0A075B6N3 115 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 FAM90A26D6RGX4 464 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 CXCL1P09341 107 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 LYL1P12980 280 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 PMCHL1Q16048 86 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 MRPL54Q6P161 138 aaKnown RBP9.28□□□□□ -0.92
HDAC6-228ENST00000486227 LHFPL1Q86WI0 220 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 BEND2Q8NDZ0 799 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 MED13LQ71F56 2210 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 SRSF10O75494 262 aaKnown RBP9.28□□□□□ -0.92
HDAC6-228ENST00000486227 SOD3P08294 240 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 SUPT4H1P63272 117 aaKnown RBP9.28□□□□□ -0.92
HDAC6-228ENST00000486227 HIST3H3Q16695 136 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 DMRTA1Q5VZB9 504 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 FAM216BQ8N7L0 139 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 PLPPR1Q8TBJ4 325 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 NPVFQ9HCQ7 196 aa9.28□□□□□ -0.92
HDAC6-228ENST00000486227 NUTF2P61970 127 aaKnown RBP9.27□□□□□ -0.92
HDAC6-228ENST00000486227 GFI1BQ5VTD9 330 aa9.27□□□□□ -0.92
HDAC6-228ENST00000486227 MRPL18Q9H0U6 180 aaKnown RBP9.27□□□□□ -0.92
HDAC6-228ENST00000486227 TMEM242Q9NWH2 141 aa9.27□□□□□ -0.92
HDAC6-228ENST00000486227 PF4V1P10720 104 aa9.27□□□□□ -0.93
HDAC6-228ENST00000486227 TMEM170AQ8WVE7 144 aa9.27□□□□□ -0.93
HDAC6-228ENST00000486227 PLSCR2Q9NRY7 297 aa9.27□□□□□ -0.93
HDAC6-228ENST00000486227 USF3Q68DE3 2245 aa9.27□□□□□ -0.93
HDAC6-228ENST00000486227 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.27□□□□□ -0.93
HDAC6-228ENST00000486227 HELTA6NFD8 242 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms