RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 SPNP16150 400 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 CNTFRP26992 372 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 POU2AF1Q16633 256 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 OR2B11Q5JQS5 317 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 LGI3Q8N145 548 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 LRTM2Q8N967 370 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 COQ8AQ8NI60 647 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 VSTM2AQ8TAG5 236 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 ZNF431Q8TF32 576 aaPredicted RBP13.01□□□□□ -0.33
TRIM54-203ENST00000485306 DPF1Q92782 380 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 HARBI1Q96MB7 349 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 HSPB9Q9BQS6 159 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 AURKAIP1Q9NWT8 199 aaPredicted RBP13.01□□□□□ -0.33
TRIM54-203ENST00000485306 SHPKQ9UHJ6 478 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 ZNF580Q9UK33 172 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 DUXBA0A1W2PPF3 345 aa13□□□□□ -0.33
TRIM54-203ENST00000485306 SNRPGP15A8MWD9 76 aa13□□□□□ -0.33
TRIM54-203ENST00000485306 RAMP3O60896 148 aa13□□□□□ -0.33
TRIM54-203ENST00000485306 IGHG4P01861 327 aa13□□□□□ -0.33
TRIM54-203ENST00000485306 RPLP1P05386 114 aaKnown RBP13□□□□□ -0.33
TRIM54-203ENST00000485306 CDX1P47902 265 aaPredicted RBP13□□□□□ -0.33
TRIM54-203ENST00000485306 RAB25P57735 213 aa13□□□□□ -0.33
TRIM54-203ENST00000485306 ERVK-16P61578 105 aa13□□□□□ -0.33
TRIM54-203ENST00000485306 SP6Q3SY56 376 aa13□□□□□ -0.33
TRIM54-203ENST00000485306 VMA21Q3ZAQ7 101 aa13□□□□□ -0.33
TRIM54-203ENST00000485306 LIN54Q6MZP7 749 aa13□□□□□ -0.33
TRIM54-203ENST00000485306 NPBQ8NG41 125 aa13□□□□□ -0.33
TRIM54-203ENST00000485306 MITD1Q8WV92 249 aa13□□□□□ -0.33
TRIM54-203ENST00000485306 RBPMSQ93062 196 aaKnown RBP13□□□□□ -0.33
TRIM54-203ENST00000485306 S1PR2O95136 353 aa12.99□□□□□ -0.33
TRIM54-203ENST00000485306 NDUFA3O95167 84 aa12.99□□□□□ -0.33
TRIM54-203ENST00000485306 HLA-DRB1P01911 266 aa12.99□□□□□ -0.33
TRIM54-203ENST00000485306 UBE2KP61086 200 aa12.99□□□□□ -0.33
TRIM54-203ENST00000485306 C5orf64Q2M2E5 130 aa12.99□□□□□ -0.33
TRIM54-203ENST00000485306 TMEM65Q6PI78 240 aa12.99□□□□□ -0.33
TRIM54-203ENST00000485306 ETV3LQ6ZN32 361 aa12.99□□□□□ -0.33
TRIM54-203ENST00000485306 C18orf65Q6ZTR6 163 aa12.99□□□□□ -0.33
TRIM54-203ENST00000485306 RNF152Q8N8N0 203 aa12.99□□□□□ -0.33
TRIM54-203ENST00000485306 TEX45Q8NA69 505 aa12.99□□□□□ -0.33
TRIM54-203ENST00000485306 CASTOR1Q8WTX7 329 aa12.99□□□□□ -0.33
TRIM54-203ENST00000485306 PHB2Q99623 299 aa12.99□□□□□ -0.33
TRIM54-203ENST00000485306 OR51J1Q9H342 316 aa12.99□□□□□ -0.33
TRIM54-203ENST00000485306 ZMAT5Q9UDW3 170 aaKnown RBP12.99□□□□□ -0.33
TRIM54-203ENST00000485306 PRKDCP78527 4128 aaKnown RBP12.98□□□□□ -0.33
TRIM54-203ENST00000485306 CCL24O00175 119 aa12.98□□□□□ -0.33
TRIM54-203ENST00000485306 CREBL2O60519 120 aaPredicted RBP12.98□□□□□ -0.33
TRIM54-203ENST00000485306 IGLV2-23P01705 113 aa12.98□□□□□ -0.33
TRIM54-203ENST00000485306 PSG5Q15238 335 aa12.98□□□□□ -0.33
TRIM54-203ENST00000485306 FAM219AQ8IW50 185 aa12.98□□□□□ -0.33
TRIM54-203ENST00000485306 SELENOHQ8IZQ5 122 aaKnown RBP12.98□□□□□ -0.33
TRIM54-203ENST00000485306 OR4A5Q8NH83 315 aa12.98□□□□□ -0.33
TRIM54-203ENST00000485306 RHOVQ96L33 236 aa12.98□□□□□ -0.33
TRIM54-203ENST00000485306 P2RX4Q99571 388 aa12.98□□□□□ -0.33
TRIM54-203ENST00000485306 C7orf66A4D0T2 115 aa12.97□□□□□ -0.33
TRIM54-203ENST00000485306 MARCH11A6NNE9 402 aa12.97□□□□□ -0.33
TRIM54-203ENST00000485306 SRRM4A7MD48 611 aaKnown RBP12.97□□□□□ -0.33
TRIM54-203ENST00000485306 RRHO14718 337 aa12.97□□□□□ -0.33
TRIM54-203ENST00000485306 FGF2P09038 288 aa12.97□□□□□ -0.33
TRIM54-203ENST00000485306 CFHR3Q02985 330 aa12.97□□□□□ -0.33
TRIM54-203ENST00000485306 PLGLAQ15195 96 aa12.97□□□□□ -0.33
TRIM54-203ENST00000485306 TATDN3Q17R31 274 aa12.97□□□□□ -0.33
TRIM54-203ENST00000485306 TMEM268Q5VZI3 342 aa12.97□□□□□ -0.33
TRIM54-203ENST00000485306 LSM10Q969L4 123 aaKnown RBP12.97□□□□□ -0.33
TRIM54-203ENST00000485306 RRNAD1Q96FB5 475 aaKnown RBP12.97□□□□□ -0.33
TRIM54-203ENST00000485306 RAX2Q96IS3 184 aa12.97□□□□□ -0.33
TRIM54-203ENST00000485306 SEC22AQ96IW7 307 aa12.97□□□□□ -0.33
TRIM54-203ENST00000485306 SEC22CQ9BRL7 303 aa12.97□□□□□ -0.33
TRIM54-203ENST00000485306 PARP11Q9NR21 331 aa12.97□□□□□ -0.33
TRIM54-203ENST00000485306 BET1LQ9NYM9 111 aa12.97□□□□□ -0.33
TRIM54-203ENST00000485306 WSB1Q9Y6I7 421 aa12.97□□□□□ -0.33
TRIM54-203ENST00000485306 IGHV7-81A0A0B4J1V7 117 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 OR2A4O95047 310 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 KRASP01116 189 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 IGKV1-39P01597 117 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 IGKV1D-39P04432 117 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 CRYGBP07316 175 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 PSMB8P28062 276 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 AKR1C2P52895 323 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 ANKRD55Q3KP44 614 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 LCNL1Q6ZST4 164 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 PUSL1Q8N0Z8 303 aaKnown RBP12.96□□□□□ -0.33
TRIM54-203ENST00000485306 C12orf45Q8N5I9 185 aaPredicted RBP12.96□□□□□ -0.33
TRIM54-203ENST00000485306 DMBX1Q8NFW5 382 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 LHFPL5Q8TAF8 219 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 OR2A7Q96R45 310 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 FBXL15Q9H469 300 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 METTL1Q9UBP6 276 aaKnown RBP12.96□□□□□ -0.33
TRIM54-203ENST00000485306 TMED3Q9Y3Q3 217 aa12.96□□□□□ -0.33
TRIM54-203ENST00000485306 TRAV41A0A0B4J266 112 aa12.95□□□□□ -0.34
TRIM54-203ENST00000485306 ATP6V0E1O15342 81 aa12.95□□□□□ -0.34
TRIM54-203ENST00000485306 SLC25A17O43808 307 aa12.95□□□□□ -0.34
TRIM54-203ENST00000485306 IL6RP08887 468 aaPredicted RBP12.95□□□□□ -0.34
TRIM54-203ENST00000485306 SAA1P0DJI8 122 aaPredicted RBP12.95□□□□□ -0.34
TRIM54-203ENST00000485306 H2BFWTQ7Z2G1 175 aa12.95□□□□□ -0.34
TRIM54-203ENST00000485306 OR52B4Q8NGK2 314 aa12.95□□□□□ -0.34
TRIM54-203ENST00000485306 RNASE11Q8TAA1 199 aaKnown RBP12.95□□□□□ -0.34
TRIM54-203ENST00000485306 TMEM167AQ8TBQ9 72 aa12.95□□□□□ -0.34
TRIM54-203ENST00000485306 C4orf3Q8WVX3 66 aa12.95□□□□□ -0.34
TRIM54-203ENST00000485306 DUX3Q96PT4 197 aa12.95□□□□□ -0.34
TRIM54-203ENST00000485306 TMEM140Q9NV12 185 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms