RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 ERMAPQ96PL5 475 aaPredicted RBP0.42□□□□□ -2.34
VPS50-217ENST00000485140 NDEL1Q9GZM8 345 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 MS4A6AQ9H2W1 248 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 TIMM22Q9Y584 194 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 GMEB1Q9Y692 573 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 LHFPL6Q9Y693 200 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 GREB1Q4ZG55 1949 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 LAMB4A4D0S4 1761 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 SETD5Q9C0A6 1442 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 ALPK2Q86TB3 2170 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 A0A087WX48 190 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 IGHV1-69-2A0A0G2JMI3 117 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 DISC1C4P0D8 188 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 GOLGA8MH3BSY2 632 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 LEPROTO15243 131 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 NOS1APO75052 506 aaPredicted RBP0.41□□□□□ -2.34
VPS50-217ENST00000485140 BRI3O95415 125 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 KRT75O95678 551 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 SHBGP04278 402 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 CCL5P13501 91 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 S100A7P31151 101 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 HADHBP55084 474 aaKnown RBP0.41□□□□□ -2.34
VPS50-217ENST00000485140 CXCR4P61073 352 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 DMTNQ08495 405 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 PMS2P3Q13401 168 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 BATFQ16520 125 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 TNFAIP8L2Q6P589 184 aaPredicted RBP0.41□□□□□ -2.34
VPS50-217ENST00000485140 SSX8Q7RTT4 187 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 OR7G1Q8NGA0 311 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 OR4C6Q8NH72 309 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 ANKRD7Q92527 254 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 DERL2Q9GZP9 239 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 WDR54Q9H977 334 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 EURLQ9NYK6 297 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 TONSLQ96HA7 1378 aa0.41□□□□□ -2.34
VPS50-217ENST00000485140 MED12LQ86YW9 2145 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 IRGMA1A4Y4 181 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 TRPC5OSA6NMA1 111 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 TMEM212A6NML5 194 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 I3L521 148 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 NSA2O95478 260 aaKnown RBP0.4□□□□□ -2.35
VPS50-217ENST00000485140 C1QAP02745 245 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 OCMP0CE72 109 aaPredicted RBP0.4□□□□□ -2.35
VPS50-217ENST00000485140 OR4D2P58180 307 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 FABP9Q0Z7S8 132 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 ZNF345Q14585 488 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 SAPCD1Q5SSQ6 148 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 AAED1Q7RTV5 226 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 FAM19A5Q7Z5A7 132 aaPredicted RBP0.4□□□□□ -2.35
VPS50-217ENST00000485140 TMEM251Q8N6I4 163 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 OR1M1Q8NGA1 313 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 AQP3Q92482 292 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 ROPN1LQ96C74 230 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 BBS2Q9BXC9 721 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 FAM96AQ9H5X1 160 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 CXorf21Q9HAI6 301 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 ANAPC10Q9UM13 185 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 BAIAP2Q9UQB8 552 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 POLR1DQ9Y2S0 133 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 GLI3P10071 1580 aa0.4□□□□□ -2.35
VPS50-217ENST00000485140 TRBV6-7A0A0A0MS04 114 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 HSBP1L1C9JCN9 74 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 TRAPPC2LH3BP13 241 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 SSNA1O43805 119 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 IL3P08700 152 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 UGT2B7P16662 529 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 HLA-DMBP28068 263 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 EIF2B2P49770 351 aaKnown RBP0.39□□□□□ -2.35
VPS50-217ENST00000485140 CLDN12P56749 244 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 RUNX1Q01196 453 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 CAV1Q03135 178 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 Q8N402 240 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 WFDC11Q8NEX6 87 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 C11orf40Q8WZ69 217 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 SMIM19Q96E16 107 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 LINC00526Q96FQ7 95 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 OR51I2Q9H344 312 aa0.39□□□□□ -2.35
VPS50-217ENST00000485140 NCOA6Q14686 2063 aaPredicted RBP0.38□□□□□ -2.35
VPS50-217ENST00000485140 TINCRA0A1B0GVN0 87 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 GGT3PA6NGU5 568 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 OR4C45A6NMZ5 311 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 BIRC5O15392 142 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 OR5F1O95221 314 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 YEATS4O95619 227 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 IGHV3-7P01780 117 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 SRP19P09132 144 aaKnown RBP0.38□□□□□ -2.35
VPS50-217ENST00000485140 FGF6P10767 208 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 KCNE1P15382 129 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 CD151P48509 253 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 UBE2IP63279 158 aaKnown RBP0.38□□□□□ -2.35
VPS50-217ENST00000485140 RPL18Q07020 188 aaKnown RBP0.38□□□□□ -2.35
VPS50-217ENST00000485140 MGAT3Q09327 533 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 TNFAIP8L3Q5GJ75 292 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 SGMS2Q8NHU3 365 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 EEF1AKMT1Q8WVE0 214 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 KCTD7Q96MP8 289 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 DKKL1Q9UK85 242 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 FUT9Q9Y231 359 aa0.38□□□□□ -2.35
VPS50-217ENST00000485140 KIF24Q5T7B8 1368 aa0.37□□□□□ -2.35
VPS50-217ENST00000485140 KIF15Q9NS87 1388 aa0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms