RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 OR4S2Q8NH73 311 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 ACOT12Q8WYK0 555 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 SLC25A38Q96DW6 304 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 USMG5Q96IX5 58 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 HSD17B10Q99714 261 aaKnown RBP5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 DCUN1D5Q9BTE7 237 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 ELOVL1Q9BW60 279 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 TINAGL1Q9GZM7 467 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 RANGRFQ9HD47 186 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 VCX3AQ9NNX9 186 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 AKIP1Q9NQ31 210 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 DIABLOQ9NR28 239 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 COA4Q9NYJ1 87 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 SPATA2Q9UM82 520 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 PRELID1Q9Y255 219 aa5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 RBMX2Q9Y388 322 aaKnown RBP5.22□□□□□ -1.57
CCDC88A-213ENST00000476903 IGKV1D-13A0A0B4J2D9 117 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 MSGN1A6NI15 193 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 MPPED1O15442 326 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 AIREO43918 545 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 RBMXL2O75526 392 aaKnown RBP5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 IGLV2-14P01704 120 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 OR9G9P0C7N8 305 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 IGKV1-13P0DP09 117 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 CBX5P45973 191 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 MSMO1Q15800 293 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 MRGPRG-AS1Q2M3A8 158 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 CT83Q5H943 113 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 OR2B11Q5JQS5 317 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 HOGA1Q86XE5 327 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 MMD2Q8IY49 270 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 ADAD2Q8NCV1 583 aaKnown RBP5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 BEST4Q8NFU0 473 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 VSTM2AQ8TAG5 236 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 TCTEX1D2Q8WW35 142 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 SRSF12Q8WXF0 261 aaKnown RBP5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 OR4C12Q96R67 309 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 SPIN2AQ99865 258 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 SPIN2BQ9BPZ2 258 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 ZNF430Q9H8G1 570 aaPredicted RBP5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 SMAD5-AS1Q9Y6J3 95 aa5.21□□□□□ -1.58
CCDC88A-213ENST00000476903 A0A087WXM4 84 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 FAM223BA6NKX1 122 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 KBTBD11O94819 623 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 OR2A4O95047 310 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 TNFAIP8O95379 198 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 PPYP01298 95 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 APELAP0DMC3 54 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 GP9P14770 177 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 SPNP16150 400 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 FCGR2CP31995 323 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 KIR2DS2P43631 304 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 RPL30P62888 115 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 DEFA5Q01523 94 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 EIF4EBP1Q13541 118 aaPredicted RBP5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 DYRK1AQ13627 763 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 UBE2NLQ5JXB2 153 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 ZNF343Q6P1L6 599 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 ZNF66Q6ZN08 573 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 SLC25A42Q86VD7 318 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 FAM223AQ8IWN6 122 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 SLC7A5P1Q8MH63 180 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 GVQW1Q8N7I0 195 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 Q8N9P0 234 aaPredicted RBP5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 ZBTB34Q8NCN2 500 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 TSPAN14Q8NG11 270 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 OR13F1Q8NGS4 319 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 SECTM1Q8WVN6 248 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 S100A16Q96FQ6 103 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 OR2A7Q96R45 310 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 AUNIPQ9H7T9 357 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 IFT46Q9NQC8 304 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 TAS2R8Q9NYW2 309 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 PEF1Q9UBV8 284 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 CHTOPQ9Y3Y2 248 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 U3KQK5 164 aa5.2□□□□□ -1.58
CCDC88A-213ENST00000476903 DNAH9Q9NYC9 4486 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 TRBV9A0A0B4J1U6 114 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 GAGE12BA1L429 117 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 GAGE12HA6NDE8 117 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 TNFSF12O43508 249 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 XRCC3O43542 346 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 HRASP01112 189 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 S100A9P06702 114 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 MAS1LP35410 378 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 TGFBR1P36897 503 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 SYNJ2BPP57105 145 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 FXYD4P59646 89 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 RHOGP84095 191 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 ATP5G2Q06055 141 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 CATR1Q13166 79 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 KLF5Q13887 457 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 TATDN3Q17R31 274 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 RPEL1Q2QD12 228 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 FAM209BQ5JX69 171 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 TMEM69Q5SWH9 247 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 VKORC1L1Q8N0U8 176 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 PUSL1Q8N0Z8 303 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 TTC9CQ8N5M4 171 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 NECAP1Q8NC96 275 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms