RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 Q8N402 240 aa9.18□□□□□ -0.94
SYNE1-223ENST00000476519 OR2K2Q8NGT1 345 aa9.18□□□□□ -0.94
SYNE1-223ENST00000476519 GPX8Q8TED1 209 aa9.18□□□□□ -0.94
SYNE1-223ENST00000476519 FANCD2OSQ96PS1 177 aa9.18□□□□□ -0.94
SYNE1-223ENST00000476519 ZNF2Q9BSG1 426 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-223ENST00000476519 COMMD5Q9GZQ3 224 aa9.18□□□□□ -0.94
SYNE1-223ENST00000476519 COMMD9Q9P000 198 aa9.18□□□□□ -0.94
SYNE1-223ENST00000476519 COMMD3Q9UBI1 195 aa9.18□□□□□ -0.94
SYNE1-223ENST00000476519 LGALS9O00182 355 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 DEFA4P12838 97 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 AREGP15514 252 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 OR2B8PP59922 312 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 VBP1P61758 197 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 NCS1P62166 190 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 THOC7Q6I9Y2 204 aaKnown RBP9.17□□□□□ -0.94
SYNE1-223ENST00000476519 LPCAT3Q6P1A2 487 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 HSD17B13Q7Z5P4 300 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-223ENST00000476519 HAPLN4Q86UW8 402 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 GPHB5Q86YW7 130 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 SGPP2Q8IWX5 399 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 DMBX1Q8NFW5 382 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 OR51H1Q8NH63 302 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 DGCR14Q96DF8 476 aaKnown RBP9.17□□□□□ -0.94
SYNE1-223ENST00000476519 CXorf58Q96LI9 332 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 ZMAT4Q9H898 229 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 C19orf73Q9NVV2 129 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 DMRT1Q9Y5R6 373 aa9.17□□□□□ -0.94
SYNE1-223ENST00000476519 GPR31O00270 319 aa9.16□□□□□ -0.94
SYNE1-223ENST00000476519 CYB5BO43169 146 aa9.16□□□□□ -0.94
SYNE1-223ENST00000476519 NDUFB8O95169 186 aa9.16□□□□□ -0.94
SYNE1-223ENST00000476519 EIF4EP06730 217 aaKnown RBP9.16□□□□□ -0.94
SYNE1-223ENST00000476519 IGHV4-30-4P0DP06 118 aa9.16□□□□□ -0.94
SYNE1-223ENST00000476519 HLA-DMAP28067 261 aa9.16□□□□□ -0.94
SYNE1-223ENST00000476519 S100GP29377 79 aa9.16□□□□□ -0.94
SYNE1-223ENST00000476519 ERVK-16P61578 105 aa9.16□□□□□ -0.94
SYNE1-223ENST00000476519 MZT2AQ6P582 158 aa9.16□□□□□ -0.94
SYNE1-223ENST00000476519 GTSCR1Q86UQ5 136 aa9.16□□□□□ -0.94
SYNE1-223ENST00000476519 AP3S1Q92572 193 aa9.16□□□□□ -0.94
SYNE1-223ENST00000476519 EEF1AKMT3Q96AZ1 226 aa9.16□□□□□ -0.94
SYNE1-223ENST00000476519 THAP7Q9BT49 309 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-223ENST00000476519 QTRT1Q9BXR0 403 aaKnown RBP9.16□□□□□ -0.94
SYNE1-223ENST00000476519 FAM212BQ9NTI7 297 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-223ENST00000476519 TMEM140Q9NV12 185 aa9.16□□□□□ -0.94
SYNE1-223ENST00000476519 THYN1Q9P016 225 aa9.16□□□□□ -0.94
SYNE1-223ENST00000476519 DNAH7Q8WXX0 4024 aa9.16□□□□□ -0.94
SYNE1-223ENST00000476519 IGLV11-55A0A075B6I3 123 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 TRBV7-1A0A0A6YYK4 115 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 TRAV3A0A0B4J244 114 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 CGB1A6NKQ9 187 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 C3orf84H3BNL1 204 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 TPPPO94811 219 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 S1PR2O95136 353 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 OR2C1O95371 312 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 ELK1P19419 428 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 HRH1P35367 487 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 TSPAN5P62079 268 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 FAM106AQ4KMX7 169 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 LAX1Q8IWV1 398 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 OR1L8Q8NGR8 309 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 RCHY1Q96PM5 261 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 FKBP11Q9NYL4 201 aa9.15□□□□□ -0.94
SYNE1-223ENST00000476519 TECRQ9NZ01 308 aaKnown RBP9.15□□□□□ -0.94
SYNE1-223ENST00000476519 TEX50A0A1B0GTY4 177 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 IGLC7A0M8Q6 106 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 MARCH11A6NNE9 402 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 PPP5D1E7EU14 171 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 KRASP01116 189 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 RLN1P04808 185 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 CLEC3BP05452 202 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 TRAPPC2P0DI81 140 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 TRAPPC2BP0DI82 140 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 FOLR2P14207 255 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 MYOD1P15172 320 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 ZNF182P17025 639 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-223ENST00000476519 PTBP1P26599 531 aaKnown RBP eCLIP9.14□□□□□ -0.95
SYNE1-223ENST00000476519 RCVRNP35243 200 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 LPAR6P43657 344 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 UCP3P55916 312 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 CTF1Q16619 201 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 DEFB114Q30KQ6 69 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 ZNF585BQ52M93 769 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 CLEC19AQ6UXS0 136 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 ADAMTSL5Q6ZMM2 481 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 C19orf35Q6ZS72 473 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 SNX29P2Q8IUI4 249 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 C15orf40Q8WUR7 153 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 FCAMRQ8WWV6 532 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 TM2D3Q9BRN9 247 aa9.14□□□□□ -0.95
SYNE1-223ENST00000476519 C2orf70A6NJV1 201 aa9.13□□□□□ -0.95
SYNE1-223ENST00000476519 HPGDSO60760 199 aa9.13□□□□□ -0.95
SYNE1-223ENST00000476519 SNAPC5O75971 98 aa9.13□□□□□ -0.95
SYNE1-223ENST00000476519 GABARAPO95166 117 aa9.13□□□□□ -0.95
SYNE1-223ENST00000476519 HLA-AP01891 365 aaKnown RBP9.13□□□□□ -0.95
SYNE1-223ENST00000476519 REG1AP05451 166 aa9.13□□□□□ -0.95
SYNE1-223ENST00000476519 OR13C7P0DN81 318 aa9.13□□□□□ -0.95
SYNE1-223ENST00000476519 ARL3P36405 182 aa9.13□□□□□ -0.95
SYNE1-223ENST00000476519 CD300EQ496F6 205 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-223ENST00000476519 VN1R17PQ8TDU5 208 aa9.13□□□□□ -0.95
SYNE1-223ENST00000476519 CCDC140Q96MF4 163 aa9.13□□□□□ -0.95
SYNE1-223ENST00000476519 TUBA4BQ9H853 241 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms