RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 PTHLHP12272 177 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 MYOD1P15172 320 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 RPL8P62917 257 aaKnown RBP9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 IDNKQ5T6J7 187 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 GVQW1Q8N7I0 195 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 ZBTB34Q8NCN2 500 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 BEST4Q8NFU0 473 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 OR13F1Q8NGS4 319 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 OR4A5Q8NH83 315 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 WDR89Q96FK6 387 aaPredicted RBP9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 WFDC10AQ9H1F0 79 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 SLC2A8Q9NY64 477 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 IGLC7A0M8Q6 106 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 OR11H12B2RN74 326 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 TPPPO94811 219 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 PPYP01298 95 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 HIST1H1BP16401 226 aaKnown RBP9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 HLA-GP17693 338 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 FCGR2CP31995 323 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 OR2B8PP59922 312 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 HYDINQ4G0P3 5121 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 OR4A47Q6IF82 309 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 CLEC19AQ6UXS0 136 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 GIMAP1Q8WWP7 306 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 FUNDC2Q9BWH2 189 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 RNF167Q9H6Y7 350 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 AUNIPQ9H7T9 357 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 MLXQ9UH92 298 aa9.18□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 TRAV18A0A075B6X5 111 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 TRBV7-1A0A0A6YYK4 115 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 TRAV3A0A0B4J244 114 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 MFSD2BA6NFX1 497 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 IGHV3-23P01764 117 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 CLEC3BP05452 202 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 ARL3P36405 182 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 TAS2R31P59538 309 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 FAM106AQ4KMX7 169 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 SSX9Q7RTT3 188 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 TMEM61Q8N0U2 210 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 SPAG16Q8N0X2 631 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 CADM3Q8N126 398 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 ZNF502Q8TBZ5 544 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 DYNLRB2Q8TF09 96 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 SECTM1Q8WVN6 248 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 CACNG8Q8WXS5 425 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 FAM110AQ9BQ89 295 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 SRSF8Q9BRL6 282 aaKnown RBP9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 AIFM2Q9BRQ8 373 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 SRD5A3Q9H8P0 318 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 S4R3C0 116 aa9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 PLECQ15149 4684 aaKnown RBP9.17□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 DPPA5A6NC42 116 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 UPK2O00526 184 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 TNFSF12O43508 249 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 DHFRP00374 187 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 HPRT1P00492 218 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 SMIM18P0DKX4 95 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 GNRHRP30968 328 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 RPS19P39019 145 aaKnown RBP9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 LSM3P62310 102 aaKnown RBP9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 ZNF57Q68EA5 555 aaPredicted RBP9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 DHRS11Q6UWP2 260 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 UNQ9165/PRO28630Q6UXU0 137 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 ZNF818PQ6ZRF7 136 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 GPR141Q7Z602 305 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 UXS1Q8NBZ7 420 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 OR5AP2Q8NGF4 316 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 IL17DQ8TAD2 202 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 SLC25A46Q96AG3 418 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 EEF1AKMT3Q96AZ1 226 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 PLEKHA2Q9HB19 425 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 DIABLOQ9NR28 239 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 ANAPC10Q9UM13 185 aa9.16□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 TRAV25A0A0B4J276 109 aa9.15□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 SULT1C2O00338 296 aa9.15□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 REG1AP05451 166 aa9.15□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 NQO2P16083 231 aa9.15□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 PTBP1P26599 531 aaKnown RBP eCLIP9.15□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 ELLP55199 621 aaPredicted RBP9.15□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 ARPC4P59998 168 aa9.15□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 GUCA2BQ16661 112 aa9.15□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 TM4SF20Q53R12 229 aa9.15□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 S100A16Q96FQ6 103 aaKnown RBP9.15□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 CXorf58Q96LI9 332 aa9.15□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 ZNF436Q9C0F3 470 aaPredicted RBP9.15□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 SLC5A7Q9GZV3 580 aa9.15□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 BIRC6Q9NR09 4857 aa9.15□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 XRCC3O43542 346 aa9.14□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 GABARAPO95166 117 aa9.14□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 NAT1P18440 290 aa9.14□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 CBX5P45973 191 aa9.14□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 RORCP51449 518 aa9.14□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 VBP1P61758 197 aa9.14□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 UBE2NLQ5JXB2 153 aa9.14□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 CD300LFQ8TDQ1 290 aa9.14□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 MARC2Q969Z3 335 aa9.14□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 ZNF414Q96IQ9 312 aa9.14□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 OVOL2Q9BRP0 275 aa9.14□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 MRPL27Q9P0M9 148 aaKnown RBP9.14□□□□□ -0.95
MSH5-SAPCD1-205ENST00000476085 TEX50A0A1B0GTY4 177 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms