RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 BET1O15155 118 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 GSTA4O15217 222 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 SLC16A6O15403 523 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 SCGB2A1O75556 95 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 TNFRSF6BO95407 300 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 ZNF705DP0CH99 300 aaPredicted RBP3.27□□□□□ -1.89
USP4-209ENST00000475873 ZNF705BP0CI00 300 aaPredicted RBP3.27□□□□□ -1.89
USP4-209ENST00000475873 AREGP15514 252 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 CEBPGP53567 150 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 NANOS3P60323 173 aaKnown RBP3.27□□□□□ -1.89
USP4-209ENST00000475873 ERVFC1-1P60608 527 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 TTC32Q5I0X7 151 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 LIPKQ5VXJ0 399 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 ZNF705AQ6ZN79 300 aaPredicted RBP3.27□□□□□ -1.89
USP4-209ENST00000475873 PDPNQ86YL7 162 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 SLC35F2Q8IXU6 374 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 OR52N1Q8NH53 320 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 ZNF502Q8TBZ5 544 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 NEK7Q8TDX7 302 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 DTD1Q8TEA8 209 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 MITD1Q8WV92 249 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 UHRF2Q96PU4 802 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 ABHD1Q96SE0 405 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 PRRG3Q9BZD7 231 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 ZNF430Q9H8G1 570 aaPredicted RBP3.27□□□□□ -1.89
USP4-209ENST00000475873 SEPSECSQ9HD40 501 aaKnown RBP3.27□□□□□ -1.89
USP4-209ENST00000475873 CHMP1AQ9HD42 196 aaPredicted RBP3.27□□□□□ -1.89
USP4-209ENST00000475873 IL1RAPQ9NPH3 570 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 H2AFY2Q9P0M6 372 aaPredicted RBP3.27□□□□□ -1.89
USP4-209ENST00000475873 PIPOXQ9P0Z9 390 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 MGAT4CQ9UBM8 478 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 SMPXQ9UHP9 88 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 MRPS7Q9Y2R9 242 aaKnown RBP3.27□□□□□ -1.89
USP4-209ENST00000475873 IGLV11-55A0A075B6I3 123 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 IGHV3OR16-13A0A075B7E8 117 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 IGHV3-74A0A0B4J1X5 117 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 A0A0B4J293 547 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 RPS10-NUDT3A0A1W2PQS6 291 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 HELTA6NFD8 242 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 ZNF98A6NK75 572 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 M0R129 80 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 TNFRSF11BO00300 401 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 MPPED1O15442 326 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 SC5DO75845 299 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 NUDT3O95989 172 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 KRT8P05787 483 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 IL6RP08887 468 aaPredicted RBP3.26□□□□□ -1.89
USP4-209ENST00000475873 CD3GP09693 182 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 UBCP0CG48 685 aaKnown RBP3.26□□□□□ -1.89
USP4-209ENST00000475873 SPP1P10451 314 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 FHITP49789 147 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 BCAP31P51572 246 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 CCL18P55774 89 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 GNG2P59768 71 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 CDK5Q00535 292 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 IRF3Q14653 427 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 GINS1Q14691 196 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 SMCO1Q147U7 214 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 OXA1LQ15070 435 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 PTGES3Q15185 160 aaKnown RBP3.26□□□□□ -1.89
USP4-209ENST00000475873 HMGN3Q15651 99 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 TMEM236Q5W0B7 351 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 CD300LDQ6UXZ3 194 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 KCTD9Q7L273 389 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 SMIM15Q7Z3B0 74 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 STHQ8IWL8 128 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 SELENOHQ8IZQ5 122 aaKnown RBP3.26□□□□□ -1.89
USP4-209ENST00000475873 MFSD4AQ8N468 514 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 ZNF114Q8NC26 417 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 CCDC54Q8NEL0 328 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 MRPL30Q8TCC3 161 aaKnown RBP3.26□□□□□ -1.89
USP4-209ENST00000475873 RNF141Q8WVD5 230 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 TNFAIP8L1Q8WVP5 186 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 PYDC1Q8WXC3 89 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 EEF1AKMT3Q96AZ1 226 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 DAZAP1Q96EP5 407 aaKnown RBP3.26□□□□□ -1.89
USP4-209ENST00000475873 PYURFQ96I23 114 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 ZNF479Q96JC4 524 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 HARBI1Q96MB7 349 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 NEDD4LQ96PU5 975 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 TBX5Q99593 518 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 SEC22CQ9BRL7 303 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 RHPN1-AS1Q9BWJ2 59 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 C11orf54Q9H0W9 315 aaPredicted RBP3.26□□□□□ -1.89
USP4-209ENST00000475873 ISG20L2Q9H9L3 353 aaKnown RBP3.26□□□□□ -1.89
USP4-209ENST00000475873 FRRS1LQ9P0K9 344 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 XCL2Q9UBD3 114 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 ZNF257Q9Y2Q1 563 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 PUS1Q9Y606 427 aaKnown RBP eCLIP3.26□□□□□ -1.89
USP4-209ENST00000475873 TMEM14AQ9Y6G1 99 aa3.26□□□□□ -1.89
USP4-209ENST00000475873 A0A0A6YYH2 397 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 A0A1W2PQL4 384 aaPredicted RBP3.25□□□□□ -1.89
USP4-209ENST00000475873 A6NJ64 397 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 CGB1A6NKQ9 187 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 NPIPB5A8MRT5 1133 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 BBIP1A8MTZ0 92 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 ZNF701M0R085 212 aaPredicted RBP3.25□□□□□ -1.89
USP4-209ENST00000475873 CCDC22O60826 627 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 GPX5O75715 221 aa3.25□□□□□ -1.89
USP4-209ENST00000475873 CCNKO75909 580 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms