RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 RBMY1BA6NDE4 496 aaKnown RBP13.16□□□□□ -0.3
COL7A1-208ENST00000470076 RBMY1EA6NEQ0 496 aaKnown RBP13.16□□□□□ -0.3
COL7A1-208ENST00000470076 A8MWP6 167 aa13.16□□□□□ -0.3
COL7A1-208ENST00000470076 PPYP01298 95 aa13.16□□□□□ -0.3
COL7A1-208ENST00000470076 IGHV3-23P01764 117 aa13.16□□□□□ -0.3
COL7A1-208ENST00000470076 RBMY1DP0C7P1 496 aaKnown RBP13.16□□□□□ -0.3
COL7A1-208ENST00000470076 EDN2P20800 178 aa13.16□□□□□ -0.3
COL7A1-208ENST00000470076 CATR1Q13166 79 aa13.16□□□□□ -0.3
COL7A1-208ENST00000470076 SLC16A13Q7RTY0 426 aa13.16□□□□□ -0.3
COL7A1-208ENST00000470076 OR5H6Q8NGV6 325 aa13.16□□□□□ -0.3
COL7A1-208ENST00000470076 SLC25A38Q96DW6 304 aa13.16□□□□□ -0.3
COL7A1-208ENST00000470076 WDR89Q96FK6 387 aaPredicted RBP13.16□□□□□ -0.3
COL7A1-208ENST00000470076 CXorf58Q96LI9 332 aa13.16□□□□□ -0.3
COL7A1-208ENST00000470076 HRASLSQ9HDD0 168 aa13.16□□□□□ -0.3
COL7A1-208ENST00000470076 S4R3C0 116 aa13.16□□□□□ -0.3
COL7A1-208ENST00000470076 IGLV11-55A0A075B6I3 123 aa13.15□□□□□ -0.3
COL7A1-208ENST00000470076 TRBV7-1A0A0A6YYK4 115 aa13.15□□□□□ -0.3
COL7A1-208ENST00000470076 ZNF320A2RRD8 509 aa13.15□□□□□ -0.3
COL7A1-208ENST00000470076 TMEM213A2RRL7 107 aa13.15□□□□□ -0.3
COL7A1-208ENST00000470076 CLEC2LP0C7M8 214 aa13.15□□□□□ -0.3
COL7A1-208ENST00000470076 PTHLHP12272 177 aa13.15□□□□□ -0.3
COL7A1-208ENST00000470076 TAS2R31P59538 309 aa13.15□□□□□ -0.3
COL7A1-208ENST00000470076 IDNKQ5T6J7 187 aa13.15□□□□□ -0.3
COL7A1-208ENST00000470076 ZNF773Q6PK81 442 aa13.15□□□□□ -0.3
COL7A1-208ENST00000470076 CACNG8Q8WXS5 425 aa13.15□□□□□ -0.3
COL7A1-208ENST00000470076 FAM110AQ9BQ89 295 aa13.15□□□□□ -0.3
COL7A1-208ENST00000470076 SLC5A7Q9GZV3 580 aa13.15□□□□□ -0.3
COL7A1-208ENST00000470076 WFDC10AQ9H1F0 79 aa13.15□□□□□ -0.3
COL7A1-208ENST00000470076 DIABLOQ9NR28 239 aa13.15□□□□□ -0.3
COL7A1-208ENST00000470076 CGB1A6NKQ9 187 aa13.14□□□□□ -0.31
COL7A1-208ENST00000470076 SULT1C2O00338 296 aa13.14□□□□□ -0.31
COL7A1-208ENST00000470076 HPRT1P00492 218 aa13.14□□□□□ -0.31
COL7A1-208ENST00000470076 REG1AP05451 166 aa13.14□□□□□ -0.31
COL7A1-208ENST00000470076 MYOD1P15172 320 aa13.14□□□□□ -0.31
COL7A1-208ENST00000470076 NQO2P16083 231 aa13.14□□□□□ -0.31
COL7A1-208ENST00000470076 OR2B8PP59922 312 aa13.14□□□□□ -0.31
COL7A1-208ENST00000470076 POU2AF1Q16633 256 aa13.14□□□□□ -0.31
COL7A1-208ENST00000470076 ZNF57Q68EA5 555 aaPredicted RBP13.14□□□□□ -0.31
COL7A1-208ENST00000470076 TMEM61Q8N0U2 210 aa13.14□□□□□ -0.31
COL7A1-208ENST00000470076 SRSF8Q9BRL6 282 aaKnown RBP13.14□□□□□ -0.31
COL7A1-208ENST00000470076 AUNIPQ9H7T9 357 aa13.14□□□□□ -0.31
COL7A1-208ENST00000470076 LOC100506127A0A0U1RQW1 187 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 TMEM127O75204 238 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 ATP6V1G2O95670 118 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 CLEC3BP05452 202 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 FGF2P09038 288 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 CBX5P45973 191 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 ANKRD55Q3KP44 614 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 UXS1Q8NBZ7 420 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 OR5AP2Q8NGF4 316 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 CD300LFQ8TDQ1 290 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 GIMAP1Q8WWP7 306 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 BORCS5Q969J3 196 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 MARC2Q969Z3 335 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 COMMD5Q9GZQ3 224 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 RNF167Q9H6Y7 350 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 THYN1Q9P016 225 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 MLXQ9UH92 298 aa13.13□□□□□ -0.31
COL7A1-208ENST00000470076 IGLC7A0M8Q6 106 aa13.12□□□□□ -0.31
COL7A1-208ENST00000470076 MFSD2BA6NFX1 497 aa13.12□□□□□ -0.31
COL7A1-208ENST00000470076 UPK2O00526 184 aa13.12□□□□□ -0.31
COL7A1-208ENST00000470076 JTBO76095 146 aa13.12□□□□□ -0.31
COL7A1-208ENST00000470076 FXYD4P59646 89 aa13.12□□□□□ -0.31
COL7A1-208ENST00000470076 OR52B4Q8NGK2 314 aa13.12□□□□□ -0.31
COL7A1-208ENST00000470076 PLEKHA2Q9HB19 425 aa13.12□□□□□ -0.31
COL7A1-208ENST00000470076 TRAV3A0A0B4J244 114 aa13.11□□□□□ -0.31
COL7A1-208ENST00000470076 TRAV25A0A0B4J276 109 aa13.11□□□□□ -0.31
COL7A1-208ENST00000470076 CYB5BO43169 146 aa13.11□□□□□ -0.31
COL7A1-208ENST00000470076 THOC7Q6I9Y2 204 aaKnown RBP13.11□□□□□ -0.31
COL7A1-208ENST00000470076 ZNF818PQ6ZRF7 136 aa13.11□□□□□ -0.31
COL7A1-208ENST00000470076 TMEM17Q86X19 198 aa13.11□□□□□ -0.31
COL7A1-208ENST00000470076 DMBX1Q8NFW5 382 aa13.11□□□□□ -0.31
COL7A1-208ENST00000470076 OR51H1Q8NH63 302 aa13.11□□□□□ -0.31
COL7A1-208ENST00000470076 ZNF502Q8TBZ5 544 aa13.11□□□□□ -0.31
COL7A1-208ENST00000470076 QTRT1Q9BXR0 403 aaKnown RBP13.11□□□□□ -0.31
COL7A1-208ENST00000470076 TMEM140Q9NV12 185 aa13.11□□□□□ -0.31
COL7A1-208ENST00000470076 COMMD9Q9P000 198 aa13.11□□□□□ -0.31
COL7A1-208ENST00000470076 EPPK1P58107 5090 aaKnown RBP13.11□□□□□ -0.31
COL7A1-208ENST00000470076 SCAF4O95104 1147 aaKnown RBP13.1□□□□□ -0.31
COL7A1-208ENST00000470076 FCER2P06734 321 aa13.1□□□□□ -0.31
COL7A1-208ENST00000470076 C8orf88P0DMB2 117 aa13.1□□□□□ -0.31
COL7A1-208ENST00000470076 PTBP1P26599 531 aaKnown RBP eCLIP13.1□□□□□ -0.31
COL7A1-208ENST00000470076 GPR183P32249 361 aa13.1□□□□□ -0.31
COL7A1-208ENST00000470076 ELLP55199 621 aaPredicted RBP13.1□□□□□ -0.31
COL7A1-208ENST00000470076 HERV-K104P61576 105 aa13.1□□□□□ -0.31
COL7A1-208ENST00000470076 TM4SF20Q53R12 229 aa13.1□□□□□ -0.31
COL7A1-208ENST00000470076 AADACL3Q5VUY0 350 aa13.1□□□□□ -0.31
COL7A1-208ENST00000470076 PLET1Q6UQ28 207 aa13.1□□□□□ -0.31
COL7A1-208ENST00000470076 BTNL8Q6UX41 500 aa13.1□□□□□ -0.31
COL7A1-208ENST00000470076 UNQ9165/PRO28630Q6UXU0 137 aa13.1□□□□□ -0.31
COL7A1-208ENST00000470076 HSD17B13Q7Z5P4 300 aaPredicted RBP13.1□□□□□ -0.31
COL7A1-208ENST00000470076 MRPL27Q9P0M9 148 aaKnown RBP13.1□□□□□ -0.31
COL7A1-208ENST00000470076 UFC1Q9Y3C8 167 aa13.1□□□□□ -0.31
COL7A1-208ENST00000470076 SELENOKQ9Y6D0 94 aa13.1□□□□□ -0.31
COL7A1-208ENST00000470076 XRCC3O43542 346 aa13.09□□□□□ -0.31
COL7A1-208ENST00000470076 S1PR2O95136 353 aa13.09□□□□□ -0.31
COL7A1-208ENST00000470076 NEDD8Q15843 81 aa13.09□□□□□ -0.31
COL7A1-208ENST00000470076 RBPMS2Q6ZRY4 209 aaKnown RBP13.09□□□□□ -0.31
COL7A1-208ENST00000470076 CROCCP3Q8IVE0 287 aa13.09□□□□□ -0.31
COL7A1-208ENST00000470076 GDPD1Q8N9F7 314 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms