RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 BET1LQ9NYM9 111 aa13.29□□□□□ -0.28
COL7A1-206ENST00000466591 TECRQ9NZ01 308 aaKnown RBP13.29□□□□□ -0.28
COL7A1-206ENST00000466591 C2orf70A6NJV1 201 aa13.28□□□□□ -0.28
COL7A1-206ENST00000466591 TMEM127O75204 238 aa13.28□□□□□ -0.28
COL7A1-206ENST00000466591 UBE2NLQ5JXB2 153 aa13.28□□□□□ -0.28
COL7A1-206ENST00000466591 HINT2Q9BX68 163 aa13.28□□□□□ -0.28
COL7A1-206ENST00000466591 ZC4H2Q9NQZ6 224 aa13.28□□□□□ -0.28
COL7A1-206ENST00000466591 TRBV7-1A0A0A6YYK4 115 aa13.27□□□□□ -0.29
COL7A1-206ENST00000466591 OR11H12B2RN74 326 aa13.27□□□□□ -0.29
COL7A1-206ENST00000466591 RBFOX2O43251 390 aaKnown RBP eCLIP13.27□□□□□ -0.29
COL7A1-206ENST00000466591 MYOD1P15172 320 aa13.27□□□□□ -0.29
COL7A1-206ENST00000466591 RPA2P15927 270 aa13.27□□□□□ -0.29
COL7A1-206ENST00000466591 S100GP29377 79 aa13.27□□□□□ -0.29
COL7A1-206ENST00000466591 EIF4EBP1Q13541 118 aaPredicted RBP13.27□□□□□ -0.29
COL7A1-206ENST00000466591 DEFB114Q30KQ6 69 aa13.27□□□□□ -0.29
COL7A1-206ENST00000466591 KCTD21Q4G0X4 260 aa13.27□□□□□ -0.29
COL7A1-206ENST00000466591 CMTM1Q8IZ96 169 aa13.27□□□□□ -0.29
COL7A1-206ENST00000466591 SAMD12Q8N8I0 201 aa13.27□□□□□ -0.29
COL7A1-206ENST00000466591 OR5H2Q8NGV7 314 aa13.27□□□□□ -0.29
COL7A1-206ENST00000466591 SRD5A3Q9H8P0 318 aa13.27□□□□□ -0.29
COL7A1-206ENST00000466591 TMEM140Q9NV12 185 aa13.27□□□□□ -0.29
COL7A1-206ENST00000466591 E7EUB6 86 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 LGALS9O00182 355 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 XRCC3O43542 346 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 CRYGCP07315 174 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 CTRB1P17538 263 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 CBLN1P23435 193 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 GPR183P32249 361 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 TAS2R46P59540 309 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 LSM3P62310 102 aaKnown RBP13.26□□□□□ -0.29
COL7A1-206ENST00000466591 ANKRD55Q3KP44 614 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 ZNF57Q68EA5 555 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-206ENST00000466591 CTRB2Q6GPI1 263 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 PLET1Q6UQ28 207 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 ZNF818PQ6ZRF7 136 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 RBPMS2Q6ZRY4 209 aaKnown RBP13.26□□□□□ -0.29
COL7A1-206ENST00000466591 GPHB5Q86YW7 130 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 DEFB125Q8N687 156 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 OR52B4Q8NGK2 314 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 GIMAP1Q8WWP7 306 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 CACNG8Q8WXS5 425 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 WDR89Q96FK6 387 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-206ENST00000466591 ZNF2Q9BSG1 426 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-206ENST00000466591 QTRT1Q9BXR0 403 aaKnown RBP13.26□□□□□ -0.29
COL7A1-206ENST00000466591 SELENOKQ9Y6D0 94 aa13.26□□□□□ -0.29
COL7A1-206ENST00000466591 HUWE1Q7Z6Z7 4374 aaKnown RBP13.25□□□□□ -0.29
COL7A1-206ENST00000466591 UPK2O00526 184 aa13.25□□□□□ -0.29
COL7A1-206ENST00000466591 SNAPC5O75971 98 aa13.25□□□□□ -0.29
COL7A1-206ENST00000466591 S1PR2O95136 353 aa13.25□□□□□ -0.29
COL7A1-206ENST00000466591 PMP2P02689 132 aa13.25□□□□□ -0.29
COL7A1-206ENST00000466591 RLN1P04808 185 aa13.25□□□□□ -0.29
COL7A1-206ENST00000466591 CD7P09564 240 aa13.25□□□□□ -0.29
COL7A1-206ENST00000466591 MECP2P51608 486 aaKnown RBP13.25□□□□□ -0.29
COL7A1-206ENST00000466591 IL17DQ8TAD2 202 aa13.25□□□□□ -0.29
COL7A1-206ENST00000466591 CCDC140Q96MF4 163 aa13.25□□□□□ -0.29
COL7A1-206ENST00000466591 FAM110AQ9BQ89 295 aa13.25□□□□□ -0.29
COL7A1-206ENST00000466591 PLEKHA2Q9HB19 425 aa13.25□□□□□ -0.29
COL7A1-206ENST00000466591 COMMD9Q9P000 198 aa13.25□□□□□ -0.29
COL7A1-206ENST00000466591 STAB2Q8WWQ8 2551 aa13.24□□□□□ -0.29
COL7A1-206ENST00000466591 SMIM31A0A1B0GVY4 71 aa13.24□□□□□ -0.29
COL7A1-206ENST00000466591 SCAF4O95104 1147 aaKnown RBP13.24□□□□□ -0.29
COL7A1-206ENST00000466591 CLEC3BP05452 202 aa13.24□□□□□ -0.29
COL7A1-206ENST00000466591 TRAPPC2P0DI81 140 aa13.24□□□□□ -0.29
COL7A1-206ENST00000466591 TRAPPC2BP0DI82 140 aa13.24□□□□□ -0.29
COL7A1-206ENST00000466591 BRWD1-AS2P59051 145 aa13.24□□□□□ -0.29
COL7A1-206ENST00000466591 OR2B8PP59922 312 aa13.24□□□□□ -0.29
COL7A1-206ENST00000466591 THOC7Q6I9Y2 204 aaKnown RBP13.24□□□□□ -0.29
COL7A1-206ENST00000466591 SLC25A24Q6NUK1 477 aa13.24□□□□□ -0.29
COL7A1-206ENST00000466591 UXS1Q8NBZ7 420 aa13.24□□□□□ -0.29
COL7A1-206ENST00000466591 OR6F1Q8NGZ6 308 aa13.24□□□□□ -0.29
COL7A1-206ENST00000466591 FANCD2OSQ96PS1 177 aa13.24□□□□□ -0.29
COL7A1-206ENST00000466591 SRSF8Q9BRL6 282 aaKnown RBP13.24□□□□□ -0.29
COL7A1-206ENST00000466591 THAP7Q9BT49 309 aaPredicted RBP13.24□□□□□ -0.29
COL7A1-206ENST00000466591 RETNQ9HD89 108 aa13.24□□□□□ -0.29
COL7A1-206ENST00000466591 UFC1Q9Y3C8 167 aa13.24□□□□□ -0.29
COL7A1-206ENST00000466591 IGLV11-55A0A075B6I3 123 aa13.23□□□□□ -0.29
COL7A1-206ENST00000466591 MFSD2BA6NFX1 497 aa13.23□□□□□ -0.29
COL7A1-206ENST00000466591 OR13C7P0DN81 318 aa13.23□□□□□ -0.29
COL7A1-206ENST00000466591 PRSS3P35030 304 aa13.23□□□□□ -0.29
COL7A1-206ENST00000466591 TAS2R20P59543 309 aa13.23□□□□□ -0.29
COL7A1-206ENST00000466591 TSPAN5P62079 268 aa13.23□□□□□ -0.29
COL7A1-206ENST00000466591 HSD17B13Q7Z5P4 300 aaPredicted RBP13.23□□□□□ -0.29
COL7A1-206ENST00000466591 EDA2RQ9HAV5 297 aa13.23□□□□□ -0.29
COL7A1-206ENST00000466591 TNCP24821 2201 aa13.23□□□□□ -0.29
COL7A1-206ENST00000466591 A0A087WXM4 84 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 TRAV3A0A0B4J244 114 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 IGHV3-35A0A0C4DH35 117 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 MARCH11A6NNE9 402 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 ZNF785A8K8V0 405 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 KRASP01116 189 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 EDN2P20800 178 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 RFX2P48378 723 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 ZNF585BQ52M93 769 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 BTNL8Q6UX41 500 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 ADAMTSL5Q6ZMM2 481 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 UBAC2Q8NBM4 344 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 OR1L8Q8NGR8 309 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 MARC2Q969Z3 335 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 WFDC10AQ9H1F0 79 aa13.22□□□□□ -0.29
COL7A1-206ENST00000466591 A0A1B0GW64 132 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms