RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MRPL41Q8IXM3 137 aaKnown RBP9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 MMD2Q8IY49 270 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 TMEM167AQ8TBQ9 72 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 ABHD5Q8WTS1 349 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 ARPC1AQ92747 370 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 SCGB3A2Q96PL1 93 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 OR2A7Q96R45 310 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 RTBDNQ9BSG5 229 aaPredicted RBP9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 WDR12Q9GZL7 423 aaKnown RBP9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 ZNF430Q9H8G1 570 aaPredicted RBP9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 VSIG4Q9Y279 399 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 TRAV41A0A0B4J266 112 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 C3orf85A0A1B0GTC6 90 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 EGR2P11161 476 aaPredicted RBP9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 CD40LGP29965 261 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 MYCNOSP40205 109 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 ERVK-16P61578 105 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 GNB1P62873 340 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 ZNF846Q147U1 533 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 TNXAQ16473 311 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 ECSCRQ19T08 205 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 C19orf54Q5BKX5 351 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 SSX9Q7RTT3 188 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 DMBX1Q8NFW5 382 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 OR4A5Q8NH83 315 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 GRPEL2Q8TAA5 225 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 TP53RKQ96S44 253 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 C7orf50Q9BRJ6 194 aaKnown RBP9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 TMEM140Q9NV12 185 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 BET1LQ9NYM9 111 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 WSB1Q9Y6I7 421 aa9.26□□□□□ -0.93
SQSTM1-206ENST00000466342 TEX13DA0A0J9YY54 714 aaPredicted RBP9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 LINC00854A0A1B0GVQ3 168 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 RBMY1BA6NDE4 496 aaKnown RBP9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 RBMY1EA6NEQ0 496 aaKnown RBP9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 CRYM-AS1A6NIL9 109 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 MARCH11A6NNE9 402 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 CENPXA8MT69 81 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 G3V318 75 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 B3GALNT1O75752 331 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 ACTL6BO94805 426 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 CNIH1O95406 144 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 IGHG4P01861 327 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 SERPINE2P07093 398 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 ELANEP08246 267 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 IL6RP08887 468 aaPredicted RBP9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 RBMY1DP0C7P1 496 aaKnown RBP9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 RPA2P15927 270 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 PPIFP30405 207 aaKnown RBP9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 MAS1LP35410 378 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 TMEM267Q0VDI3 215 aaPredicted RBP9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 AKIRIN2Q53H80 203 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 ETV3LQ6ZN32 361 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 ZNF695Q8IW36 515 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 CADM3Q8N126 398 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 RNF152Q8N8N0 203 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 SRSF12Q8WXF0 261 aaKnown RBP9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 TMEM230Q96A57 120 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 SLC25A21Q9BQT8 299 aaPredicted RBP9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 FAM103A1Q9BTL3 118 aaKnown RBP9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 NAA60Q9H7X0 242 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 NUBP2Q9Y5Y2 271 aa9.25□□□□□ -0.93
SQSTM1-206ENST00000466342 RYR1P21817 5038 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 NUDT19A8MXV4 375 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 UPK2O00526 184 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 KRASP01116 189 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 IGKV1-39P01597 117 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 IGKV1D-39P04432 117 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 FGF2P09038 288 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 OR5AC1P0C628 307 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 UCP1P25874 307 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 G6PCP35575 357 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 CDX1P47902 265 aaPredicted RBP9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 RPL8P62917 257 aaKnown RBP9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 FOXE3Q13461 319 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 RBMS2Q15434 407 aaKnown RBP9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 CXorf66Q5JRM2 361 aaPredicted RBP9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 UNQ5815/PRO19632Q6UWF5 114 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 C8orf86Q6ZUL3 223 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 MINDY2Q8NBR6 621 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 ADAD2Q8NCV1 583 aaKnown RBP9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 KLHL30-AS1Q8NEE0 82 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 LFNGQ8NES3 379 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 P2RX4Q99571 388 aa9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 FOXA2Q9Y261 457 aaPredicted RBP9.24□□□□□ -0.93
SQSTM1-206ENST00000466342 A0A1W2PN81 502 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 PLA2G10O15496 165 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 SOX15O60248 233 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 IGLV1-40P01703 118 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 HLA-GP17693 338 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 PSMB8P28062 276 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 BTCP35070 178 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 CHRNA7P36544 502 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 CCR6P51684 374 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 TRIM16LQ309B1 348 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 SP6Q3SY56 376 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 C10orf55Q5SWW7 151 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 SGPP2Q8IWX5 399 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 OR5M8Q8NGP6 311 aa9.23□□□□□ -0.93
SQSTM1-206ENST00000466342 SEC22AQ96IW7 307 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms