RNA–Protein interactions for RNA: ENST00000454350.5

UBE2D4-208, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), human

TSL 2

Gene UBE2D4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D4-208	ENST00000454350	NEURL2	Q9BR09	285 aa		13.94	□□□□□ -0.18
UBE2D4-208	ENST00000454350	SLC5A7	Q9GZV3	580 aa		13.94	□□□□□ -0.18
UBE2D4-208	ENST00000454350	PLEKHA3	Q9HB20	300 aa		13.94	□□□□□ -0.18
UBE2D4-208	ENST00000454350	ANAPC10	Q9UM13	185 aa		13.94	□□□□□ -0.18
UBE2D4-208	ENST00000454350	RBMY1B	A6NDE4	496 aa	Known RBP	13.93	□□□□□ -0.18
UBE2D4-208	ENST00000454350	RBMY1E	A6NEQ0	496 aa	Known RBP	13.93	□□□□□ -0.18
UBE2D4-208	ENST00000454350	XRCC3	O43542	346 aa		13.93	□□□□□ -0.18
UBE2D4-208	ENST00000454350	TMEM127	O75204	238 aa		13.93	□□□□□ -0.18
UBE2D4-208	ENST00000454350	REG1A	P05451	166 aa		13.93	□□□□□ -0.18
UBE2D4-208	ENST00000454350	RBMY1D	P0C7P1	496 aa	Known RBP	13.93	□□□□□ -0.18
UBE2D4-208	ENST00000454350	CD81	P60033	236 aa		13.93	□□□□□ -0.18
UBE2D4-208	ENST00000454350	CACNG8	Q8WXS5	425 aa		13.93	□□□□□ -0.18
UBE2D4-208	ENST00000454350	ISOC1	Q96CN7	298 aa		13.93	□□□□□ -0.18
UBE2D4-208	ENST00000454350	WFDC10A	Q9H1F0	79 aa		13.93	□□□□□ -0.18
UBE2D4-208	ENST00000454350	TUBA4B	Q9H853	241 aa		13.93	□□□□□ -0.18
UBE2D4-208	ENST00000454350	DIABLO	Q9NR28	239 aa		13.93	□□□□□ -0.18
UBE2D4-208	ENST00000454350	TMEM213	A2RRL7	107 aa		13.92	□□□□□ -0.18
UBE2D4-208	ENST00000454350	DPPA5	A6NC42	116 aa		13.92	□□□□□ -0.18
UBE2D4-208	ENST00000454350	MEIS3P1	A6NDR6	274 aa		13.92	□□□□□ -0.18
UBE2D4-208	ENST00000454350	MFSD2B	A6NFX1	497 aa		13.92	□□□□□ -0.18
UBE2D4-208	ENST00000454350	UPK2	O00526	184 aa		13.92	□□□□□ -0.18
UBE2D4-208	ENST00000454350	CBLN1	P23435	193 aa		13.92	□□□□□ -0.18
UBE2D4-208	ENST00000454350	GNRHR	P30968	328 aa		13.92	□□□□□ -0.18
UBE2D4-208	ENST00000454350	TAS2R31	P59538	309 aa		13.92	□□□□□ -0.18
UBE2D4-208	ENST00000454350	FXYD4	P59646	89 aa		13.92	□□□□□ -0.18
UBE2D4-208	ENST00000454350	DEFB125	Q8N687	156 aa		13.92	□□□□□ -0.18
UBE2D4-208	ENST00000454350	HIPK2	Q9H2X6	1198 aa		13.92	□□□□□ -0.18
UBE2D4-208	ENST00000454350	RETN	Q9HD89	108 aa		13.92	□□□□□ -0.18
UBE2D4-208	ENST00000454350	CEPT1	Q9Y6K0	416 aa		13.92	□□□□□ -0.18
UBE2D4-208	ENST00000454350	LCE6A	A0A183	80 aa		13.91	□□□□□ -0.18
UBE2D4-208	ENST00000454350		A8MWP6	167 aa		13.91	□□□□□ -0.18
UBE2D4-208	ENST00000454350	HPRT1	P00492	218 aa		13.91	□□□□□ -0.18
UBE2D4-208	ENST00000454350	ARL3	P36405	182 aa		13.91	□□□□□ -0.18
UBE2D4-208	ENST00000454350	RPS19	P39019	145 aa	Known RBP	13.91	□□□□□ -0.18
UBE2D4-208	ENST00000454350	CBX5	P45973	191 aa		13.91	□□□□□ -0.18
UBE2D4-208	ENST00000454350	DHRS11	Q6UWP2	260 aa		13.91	□□□□□ -0.18
UBE2D4-208	ENST00000454350	DYNLRB2	Q8TF09	96 aa		13.91	□□□□□ -0.18
UBE2D4-208	ENST00000454350	YIPF6	Q96EC8	236 aa		13.91	□□□□□ -0.18
UBE2D4-208	ENST00000454350	WDR89	Q96FK6	387 aa	Predicted RBP	13.91	□□□□□ -0.18
UBE2D4-208	ENST00000454350	PLEKHA2	Q9HB19	425 aa		13.91	□□□□□ -0.18
UBE2D4-208	ENST00000454350	TECR	Q9NZ01	308 aa	Known RBP	13.91	□□□□□ -0.18
UBE2D4-208	ENST00000454350	SELENOK	Q9Y6D0	94 aa		13.91	□□□□□ -0.18
UBE2D4-208	ENST00000454350	S1PR2	O95136	353 aa		13.9	□□□□□ -0.18
UBE2D4-208	ENST00000454350	FGF2	P09038	288 aa		13.9	□□□□□ -0.18
UBE2D4-208	ENST00000454350	NQO2	P16083	231 aa		13.9	□□□□□ -0.18
UBE2D4-208	ENST00000454350	HIST1H1B	P16401	226 aa	Known RBP	13.9	□□□□□ -0.18
UBE2D4-208	ENST00000454350	NAT1	P18440	290 aa		13.9	□□□□□ -0.18
UBE2D4-208	ENST00000454350	CATR1	Q13166	79 aa		13.9	□□□□□ -0.18
UBE2D4-208	ENST00000454350	OR51H1	Q8NH63	302 aa		13.9	□□□□□ -0.18
UBE2D4-208	ENST00000454350	EEF1AKMT3	Q96AZ1	226 aa		13.9	□□□□□ -0.18
UBE2D4-208	ENST00000454350	AIFM2	Q9BRQ8	373 aa		13.9	□□□□□ -0.18
UBE2D4-208	ENST00000454350	HRASLS	Q9HDD0	168 aa		13.9	□□□□□ -0.18
UBE2D4-208	ENST00000454350	PALMD	Q9NP74	551 aa		13.9	□□□□□ -0.18
UBE2D4-208	ENST00000454350	TMEM140	Q9NV12	185 aa		13.9	□□□□□ -0.18
UBE2D4-208	ENST00000454350	MLX	Q9UH92	298 aa		13.9	□□□□□ -0.18
UBE2D4-208	ENST00000454350	TPPP	O94811	219 aa		13.89	□□□□□ -0.19
UBE2D4-208	ENST00000454350	DHFR	P00374	187 aa		13.89	□□□□□ -0.19
UBE2D4-208	ENST00000454350	RFX2	P48378	723 aa		13.89	□□□□□ -0.19
UBE2D4-208	ENST00000454350	UNQ9165/PRO28630	Q6UXU0	137 aa		13.89	□□□□□ -0.19
UBE2D4-208	ENST00000454350	TMEM17	Q86X19	198 aa		13.89	□□□□□ -0.19
UBE2D4-208	ENST00000454350	TMEM61	Q8N0U2	210 aa		13.89	□□□□□ -0.19
UBE2D4-208	ENST00000454350	OR10W1	Q8NGF6	305 aa		13.89	□□□□□ -0.19
UBE2D4-208	ENST00000454350	ZNF502	Q8TBZ5	544 aa		13.89	□□□□□ -0.19
UBE2D4-208	ENST00000454350	SRSF8	Q9BRL6	282 aa	Known RBP	13.89	□□□□□ -0.19
UBE2D4-208	ENST00000454350	SLC2A8	Q9NY64	477 aa		13.89	□□□□□ -0.19
UBE2D4-208	ENST00000454350	TRBV7-1	A0A0A6YYK4	115 aa		13.88	□□□□□ -0.19
UBE2D4-208	ENST00000454350	OR11H12	B2RN74	326 aa		13.88	□□□□□ -0.19
UBE2D4-208	ENST00000454350	CLEC3B	P05452	202 aa		13.88	□□□□□ -0.19
UBE2D4-208	ENST00000454350	C8orf88	P0DMB2	117 aa		13.88	□□□□□ -0.19
UBE2D4-208	ENST00000454350	UBE2NL	Q5JXB2	153 aa		13.88	□□□□□ -0.19
UBE2D4-208	ENST00000454350	CD300LF	Q8TDQ1	290 aa		13.88	□□□□□ -0.19
UBE2D4-208	ENST00000454350	MOB3A	Q96BX8	217 aa		13.88	□□□□□ -0.19
UBE2D4-208	ENST00000454350	S100A16	Q96FQ6	103 aa	Known RBP	13.88	□□□□□ -0.19
UBE2D4-208	ENST00000454350	CXorf58	Q96LI9	332 aa		13.88	□□□□□ -0.19
UBE2D4-208	ENST00000454350	FAM110A	Q9BQ89	295 aa		13.88	□□□□□ -0.19
UBE2D4-208	ENST00000454350	EHF	Q9NZC4	300 aa		13.88	□□□□□ -0.19
UBE2D4-208	ENST00000454350	COMMD9	Q9P000	198 aa		13.88	□□□□□ -0.19
UBE2D4-208	ENST00000454350	PGLYRP1	O75594	196 aa	Predicted RBP	13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	DEFA4	P12838	97 aa		13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	RPA2	P15927	270 aa		13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	TAS2R20	P59543	309 aa		13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	WT1-AS	Q06250	92 aa		13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	GUCA2B	Q16661	112 aa		13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	FAM106A	Q4KMX7	169 aa		13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	ZNF585B	Q52M93	769 aa		13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	TM4SF20	Q53R12	229 aa		13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	AADACL3	Q5VUY0	350 aa		13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	LYSMD2	Q8IV50	215 aa		13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	CROCCP3	Q8IVE0	287 aa		13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	UXS1	Q8NBZ7	420 aa		13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	QTRT1	Q9BXR0	403 aa	Known RBP	13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	SRD5A3	Q9H8P0	318 aa		13.87	□□□□□ -0.19
UBE2D4-208	ENST00000454350	HYDIN	Q4G0P3	5121 aa		13.86	□□□□□ -0.19
UBE2D4-208	ENST00000454350	TEX50	A0A1B0GTY4	177 aa		13.86	□□□□□ -0.19
UBE2D4-208	ENST00000454350	ZNF320	A2RRD8	509 aa		13.86	□□□□□ -0.19
UBE2D4-208	ENST00000454350	IFNA6	P05013	189 aa		13.86	□□□□□ -0.19
UBE2D4-208	ENST00000454350	F2R	P25116	425 aa		13.86	□□□□□ -0.19
UBE2D4-208	ENST00000454350	MFAP2	P55001	183 aa		13.86	□□□□□ -0.19
UBE2D4-208	ENST00000454350	HERV-K104	P61576	105 aa		13.86	□□□□□ -0.19
UBE2D4-208	ENST00000454350	ZNF57	Q68EA5	555 aa	Predicted RBP	13.86	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms