RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 REC114Q7Z4M0 266 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 OR2T6Q8NHC8 308 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 MRAPQ8TCY5 172 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 WIPF2Q8TF74 440 aaPredicted RBP9.64□□□□□ -0.87
PTPRF-208ENST00000437607 CHAC2Q8WUX2 184 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 SEC22AQ96IW7 307 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 RHOVQ96L33 236 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 ZNF702PQ9H963 129 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 SERTAD4Q9NUC0 356 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 AURKAIP1Q9NWT8 199 aaPredicted RBP9.64□□□□□ -0.87
PTPRF-208ENST00000437607 CACNG5Q9UF02 275 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 TENM3Q9P273 2699 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 FAM90A9PA6NNJ1 464 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 CCNKO75909 580 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 SCGB1D2O95969 90 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 FAM106CPP0CH98 169 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 CD28P10747 220 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 HLA-GP17693 338 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 CXCL3P19876 107 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 LGALS7P47929 136 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 DYNLT3P51808 116 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 CYCSP99999 105 aaKnown RBP9.63□□□□□ -0.87
PTPRF-208ENST00000437607 SMCO1Q147U7 214 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 POU2AF1Q16633 256 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 NSUN5P1Q3KNT7 163 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 OR4A47Q6IF82 309 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 VKORC1L1Q8N0U8 176 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 ZBTB8BQ8NAP8 495 aaPredicted RBP9.63□□□□□ -0.87
PTPRF-208ENST00000437607 OR1S1Q8NH92 325 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 RNF5Q99942 180 aa9.63□□□□□ -0.87
PTPRF-208ENST00000437607 ZNF436Q9C0F3 470 aaPredicted RBP9.63□□□□□ -0.87
PTPRF-208ENST00000437607 A0A0G2JRQ6 117 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 A0A1B0GU03 582 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 MPTX1A8MV57 137 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 NBR2O15453 112 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 SLC25A17O43808 307 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 SNAPC5O75971 98 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 KBTBD11O94819 623 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 OR2A4O95047 310 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 PET100P0DJ07 73 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 SLC25A6P12236 298 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 CD24P25063 80 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 H2BFSP57053 126 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 OR2B8PP59922 312 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 S100A10P60903 97 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 UBE2KP61086 200 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 RAP2BP61225 183 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 Q8N2B8 174 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 OR4A16Q8NH70 328 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 OR4A5Q8NH83 315 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 GPR146Q96CH1 333 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 EAF1Q96JC9 268 aaPredicted RBP9.62□□□□□ -0.87
PTPRF-208ENST00000437607 C2orf50Q96LR7 162 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 OR2A7Q96R45 310 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 BET1LQ9NYM9 111 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 GSKIPQ9P0R6 139 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 PITPNC1Q9UKF7 332 aa9.62□□□□□ -0.87
PTPRF-208ENST00000437607 DYNC2H1Q8NCM8 4307 aaKnown RBP9.61□□□□□ -0.87
PTPRF-208ENST00000437607 C15orf61A6NNL5 157 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 WRBO00258 174 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 FBXO24O75426 580 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 P0C879 139 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 HNF4GQ14541 408 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 IZUMO4Q1ZYL8 232 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 THNSL2Q86YJ6 484 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 FOXRED2Q8IWF2 684 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 PUSL1Q8N0Z8 303 aaKnown RBP9.61□□□□□ -0.87
PTPRF-208ENST00000437607 OR8H1Q8NGG4 311 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 OR10C1Q96KK4 312 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 NMES1Q9C002 83 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 NPFFR1Q9GZQ6 430 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 RANGRFQ9HD47 186 aaPredicted RBP9.61□□□□□ -0.87
PTPRF-208ENST00000437607 COA4Q9NYJ1 87 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 METTL1Q9UBP6 276 aaKnown RBP9.61□□□□□ -0.87
PTPRF-208ENST00000437607 PRNDQ9UKY0 176 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 TCF19Q9Y242 345 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 MOB4Q9Y3A3 225 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 DNAH7Q8WXX0 4024 aa9.61□□□□□ -0.87
PTPRF-208ENST00000437607 A6NDX4 124 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 SRRM4A7MD48 611 aaKnown RBP9.6□□□□□ -0.87
PTPRF-208ENST00000437607 RRHO14718 337 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 NXPH3O95157 252 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 NDUFA3O95167 84 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 IGLV2-23P01705 113 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 OR9G9P0C7N8 305 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 CNTFRP26992 372 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 NKX2-1P43699 371 aaPredicted RBP9.6□□□□□ -0.87
PTPRF-208ENST00000437607 EBI3Q14213 229 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 PSG5Q15238 335 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 LRRC37A5PQ49AS3 106 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 Q6ZS46 218 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 TEX45Q8NA69 505 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 OR2T35Q8NGX2 323 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 TMEM167AQ8TBQ9 72 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 RBMXL1Q96E39 390 aaKnown RBP9.6□□□□□ -0.87
PTPRF-208ENST00000437607 CITED2Q99967 270 aaPredicted RBP9.6□□□□□ -0.87
PTPRF-208ENST00000437607 WNT10AQ9GZT5 417 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 ZFP57Q9NU63 452 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 CACFD1Q9UGQ2 172 aa9.6□□□□□ -0.87
PTPRF-208ENST00000437607 NCBP2LA6PVI3 153 aaKnown RBP9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms