RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 CGB1A6NKQ9 187 aa12.88□□□□□ -0.35
TRIM39-209ENST00000428728 ZNF785A8K8V0 405 aa12.88□□□□□ -0.35
TRIM39-209ENST00000428728 CRYGCP07315 174 aa12.88□□□□□ -0.35
TRIM39-209ENST00000428728 CTRB1P17538 263 aa12.88□□□□□ -0.35
TRIM39-209ENST00000428728 MSMO1Q15800 293 aa12.88□□□□□ -0.35
TRIM39-209ENST00000428728 CTRB2Q6GPI1 263 aa12.88□□□□□ -0.35
TRIM39-209ENST00000428728 SRD5A3Q9H8P0 318 aa12.88□□□□□ -0.35
TRIM39-209ENST00000428728 ZC4H2Q9NQZ6 224 aa12.88□□□□□ -0.35
TRIM39-209ENST00000428728 DIABLOQ9NR28 239 aa12.88□□□□□ -0.35
TRIM39-209ENST00000428728 BET1LQ9NYM9 111 aa12.88□□□□□ -0.35
TRIM39-209ENST00000428728 ZNF320A2RRD8 509 aa12.87□□□□□ -0.35
TRIM39-209ENST00000428728 MFSD2BA6NFX1 497 aa12.87□□□□□ -0.35
TRIM39-209ENST00000428728 LGALS9O00182 355 aa12.87□□□□□ -0.35
TRIM39-209ENST00000428728 HERV-K104P61576 105 aa12.87□□□□□ -0.35
TRIM39-209ENST00000428728 ZNF818PQ6ZRF7 136 aa12.87□□□□□ -0.35
TRIM39-209ENST00000428728 ZBTB34Q8NCN2 500 aa12.87□□□□□ -0.35
TRIM39-209ENST00000428728 OR4A5Q8NH83 315 aa12.87□□□□□ -0.35
TRIM39-209ENST00000428728 HIPK2Q9H2X6 1198 aa12.87□□□□□ -0.35
TRIM39-209ENST00000428728 IFT46Q9NQC8 304 aa12.87□□□□□ -0.35
TRIM39-209ENST00000428728 DYNC2H1Q8NCM8 4307 aaKnown RBP12.87□□□□□ -0.35
TRIM39-209ENST00000428728 IGLV11-55A0A075B6I3 123 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 TRAV3A0A0B4J244 114 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 TMEM213A2RRL7 107 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 RBMY1BA6NDE4 496 aaKnown RBP12.86□□□□□ -0.35
TRIM39-209ENST00000428728 RBMY1EA6NEQ0 496 aaKnown RBP12.86□□□□□ -0.35
TRIM39-209ENST00000428728 OR11H12B2RN74 326 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 RBFOX2O43251 390 aaKnown RBP eCLIP12.86□□□□□ -0.35
TRIM39-209ENST00000428728 RBMY1DP0C7P1 496 aaKnown RBP12.86□□□□□ -0.35
TRIM39-209ENST00000428728 RPA2P15927 270 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 HIST1H1BP16401 226 aaKnown RBP12.86□□□□□ -0.35
TRIM39-209ENST00000428728 CBLN1P23435 193 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 TGFBR1P36897 503 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 TAS2R31P59538 309 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 AADACL3Q5VUY0 350 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 GPHB5Q86YW7 130 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 DMBX1Q8NFW5 382 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 OR5AP2Q8NGF4 316 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 AIFM2Q9BRQ8 373 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 TMEM140Q9NV12 185 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 TECRQ9NZ01 308 aaKnown RBP12.86□□□□□ -0.35
TRIM39-209ENST00000428728 EHFQ9NZC4 300 aa12.86□□□□□ -0.35
TRIM39-209ENST00000428728 IGLC7A0M8Q6 106 aa12.85□□□□□ -0.35
TRIM39-209ENST00000428728 S1PR2O95136 353 aa12.85□□□□□ -0.35
TRIM39-209ENST00000428728 HPRT1P00492 218 aa12.85□□□□□ -0.35
TRIM39-209ENST00000428728 NQO2P16083 231 aa12.85□□□□□ -0.35
TRIM39-209ENST00000428728 GPR183P32249 361 aa12.85□□□□□ -0.35
TRIM39-209ENST00000428728 CBX5P45973 191 aa12.85□□□□□ -0.35
TRIM39-209ENST00000428728 OR2B8PP59922 312 aa12.85□□□□□ -0.35
TRIM39-209ENST00000428728 FAM106AQ4KMX7 169 aa12.85□□□□□ -0.35
TRIM39-209ENST00000428728 LINC00322Q6ZN03 302 aaPredicted RBP12.85□□□□□ -0.35
TRIM39-209ENST00000428728 TMEM61Q8N0U2 210 aa12.85□□□□□ -0.35
TRIM39-209ENST00000428728 COMMD5Q9GZQ3 224 aa12.85□□□□□ -0.35
TRIM39-209ENST00000428728 MLXQ9UH92 298 aa12.85□□□□□ -0.35
TRIM39-209ENST00000428728 TRBV7-1A0A0A6YYK4 115 aa12.84□□□□□ -0.35
TRIM39-209ENST00000428728 IGHV3-35A0A0C4DH35 117 aa12.84□□□□□ -0.35
TRIM39-209ENST00000428728 A8MWP6 167 aa12.84□□□□□ -0.35
TRIM39-209ENST00000428728 UPK2O00526 184 aa12.84□□□□□ -0.35
TRIM39-209ENST00000428728 SCAF4O95104 1147 aaKnown RBP12.84□□□□□ -0.35
TRIM39-209ENST00000428728 POU2AF1Q16633 256 aa12.84□□□□□ -0.35
TRIM39-209ENST00000428728 KCTD21Q4G0X4 260 aa12.84□□□□□ -0.35
TRIM39-209ENST00000428728 ZNF57Q68EA5 555 aaPredicted RBP12.84□□□□□ -0.35
TRIM39-209ENST00000428728 BTNL8Q6UX41 500 aa12.84□□□□□ -0.35
TRIM39-209ENST00000428728 SLC16A13Q7RTY0 426 aa12.84□□□□□ -0.35
TRIM39-209ENST00000428728 UXS1Q8NBZ7 420 aa12.84□□□□□ -0.35
TRIM39-209ENST00000428728 CXorf58Q96LI9 332 aa12.84□□□□□ -0.35
TRIM39-209ENST00000428728 CSMD3Q7Z407 3707 aa12.84□□□□□ -0.35
TRIM39-209ENST00000428728 XRCC3O43542 346 aa12.83□□□□□ -0.36
TRIM39-209ENST00000428728 RLN1P04808 185 aa12.83□□□□□ -0.36
TRIM39-209ENST00000428728 KLK9Q2XQG4 91 aa12.83□□□□□ -0.36
TRIM39-209ENST00000428728 TM4SF20Q53R12 229 aa12.83□□□□□ -0.36
TRIM39-209ENST00000428728 UBE2NLQ5JXB2 153 aa12.83□□□□□ -0.36
TRIM39-209ENST00000428728 UNQ9165/PRO28630Q6UXU0 137 aa12.83□□□□□ -0.36
TRIM39-209ENST00000428728 OR10W1Q8NGF6 305 aa12.83□□□□□ -0.36
TRIM39-209ENST00000428728 GIMAP1Q8WWP7 306 aa12.83□□□□□ -0.36
TRIM39-209ENST00000428728 QTRT1Q9BXR0 403 aaKnown RBP12.83□□□□□ -0.36
TRIM39-209ENST00000428728 PLEKHA2Q9HB19 425 aa12.83□□□□□ -0.36
TRIM39-209ENST00000428728 COMMD9Q9P000 198 aa12.83□□□□□ -0.36
TRIM39-209ENST00000428728 KLK9Q9UKQ9 250 aa12.83□□□□□ -0.36
TRIM39-209ENST00000428728 CLEC3BP05452 202 aa12.82□□□□□ -0.36
TRIM39-209ENST00000428728 ERVK-16P61578 105 aa12.82□□□□□ -0.36
TRIM39-209ENST00000428728 LSM3P62310 102 aaKnown RBP12.82□□□□□ -0.36
TRIM39-209ENST00000428728 SAMD12Q8N8I0 201 aa12.82□□□□□ -0.36
TRIM39-209ENST00000428728 OR52B4Q8NGK2 314 aa12.82□□□□□ -0.36
TRIM39-209ENST00000428728 ZNF502Q8TBZ5 544 aa12.82□□□□□ -0.36
TRIM39-209ENST00000428728 S100A16Q96FQ6 103 aaKnown RBP12.82□□□□□ -0.36
TRIM39-209ENST00000428728 ZNF2Q9BSG1 426 aaPredicted RBP12.82□□□□□ -0.36
TRIM39-209ENST00000428728 STARD9Q9P2P6 4700 aa12.81□□□□□ -0.36
TRIM39-209ENST00000428728 PMP2P02689 132 aa12.81□□□□□ -0.36
TRIM39-209ENST00000428728 GNRHRP30968 328 aa12.81□□□□□ -0.36
TRIM39-209ENST00000428728 RFX2P48378 723 aa12.81□□□□□ -0.36
TRIM39-209ENST00000428728 TAS2R20P59543 309 aa12.81□□□□□ -0.36
TRIM39-209ENST00000428728 TMEM69Q5SWH9 247 aa12.81□□□□□ -0.36
TRIM39-209ENST00000428728 PLET1Q6UQ28 207 aa12.81□□□□□ -0.36
TRIM39-209ENST00000428728 OR5H2Q8NGV7 314 aa12.81□□□□□ -0.36
TRIM39-209ENST00000428728 CD300LFQ8TDQ1 290 aa12.81□□□□□ -0.36
TRIM39-209ENST00000428728 BORCS5Q969J3 196 aa12.81□□□□□ -0.36
TRIM39-209ENST00000428728 HINT2Q9BX68 163 aa12.81□□□□□ -0.36
TRIM39-209ENST00000428728 FXYD6Q9H0Q3 95 aa12.81□□□□□ -0.36
TRIM39-209ENST00000428728 MARCH11A6NNE9 402 aa12.8□□□□□ -0.36
TRIM39-209ENST00000428728 TMEM127O75204 238 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms