RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 FBLN7Q53RD9 439 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 CLLU1Q5K131 121 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 THNSL2Q86YJ6 484 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 AJUBAQ96IF1 538 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 ATP5SQ99766 215 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 ARV1Q9H2C2 271 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 TBL2Q9Y4P3 447 aaKnown RBP11.3□□□□□ -0.6
GPNMB-203ENST00000409458 PTPN13Q12923 2485 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 TEX50A0A1B0GTY4 177 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 C15orf62A8K5M9 175 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 PMS2P5A8MQ11 134 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 ATP6V1G1O75348 118 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 CRYGBP07316 175 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 NMBP08949 121 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 CD1BP29016 333 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 RPL8P62917 257 aaKnown RBP11.29□□□□□ -0.6
GPNMB-203ENST00000409458 PRCDQ00LT1 54 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 PSG5Q15238 335 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 NDUFA5Q16718 116 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 Q5PR19 223 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 OR8G2PQ6IF36 304 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 C1orf159Q96HA4 380 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 CLCC1Q96S66 551 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 GINS3Q9BRX5 216 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 HINT2Q9BX68 163 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 ZNF430Q9H8G1 570 aaPredicted RBP11.29□□□□□ -0.6
GPNMB-203ENST00000409458 FKBP11Q9NYL4 201 aa11.29□□□□□ -0.6
GPNMB-203ENST00000409458 CENPVL3A0A0U1RRI6 287 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 OOSP1A8MZH6 123 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 FBXO24O75426 580 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 IGKV1D-33P01593 117 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 IGKV1-33P01594 117 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 SAA4P35542 130 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 RAB14P61106 215 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 ZNF266Q14584 549 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 CCDC144NLQ6NUI1 221 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 HSD17B11Q8NBQ5 300 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 OR5B3Q8NH48 314 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 MBD6Q96DN6 1003 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 HIPK2Q9H2X6 1198 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 PLEKHA3Q9HB20 300 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 HEYLQ9NQ87 328 aaPredicted RBP11.28□□□□□ -0.6
GPNMB-203ENST00000409458 POLQO75417 2590 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 CENPEQ02224 2701 aa11.28□□□□□ -0.6
GPNMB-203ENST00000409458 B4DSR2 109 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 NPFFO15130 113 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 LY86O95711 162 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 CD24P25063 80 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 HBG1P69891 147 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 HBG2P69892 147 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 SLC38A11Q08AI6 406 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 PJVKQ0ZLH3 352 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 C10orf55Q5SWW7 151 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 RUSC1-AS1Q66K80 236 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 KRTAP1-3Q8IUG1 177 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 LILRB2Q8N423 598 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 TEX45Q8NA69 505 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 MAPK1IP1LQ8NDC0 245 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 TMEM170AQ8WVE7 144 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 TSNAXQ99598 290 aaKnown RBP11.27□□□□□ -0.6
GPNMB-203ENST00000409458 SH3BGRL3Q9H299 93 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 SLC25A32Q9H2D1 315 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 ENY2Q9NPA8 101 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 ITGB1BP2Q9UKP3 347 aa11.27□□□□□ -0.6
GPNMB-203ENST00000409458 SVEP1Q4LDE5 3571 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 HELZ2Q9BYK8 2649 aaKnown RBP11.27□□□□□ -0.61
GPNMB-203ENST00000409458 TNCP24821 2201 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 IGHV3OR16-10A0A075B7F0 116 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 TRAV40A0A0B4J280 105 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 CGB1A6NKQ9 187 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 RNF223E7ERA6 249 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 E7EUB6 86 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 RRHO14718 337 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 DFFBO76075 338 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 IFNA10P01566 189 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 SNRNP70P08621 437 aaKnown RBP11.27□□□□□ -0.61
GPNMB-203ENST00000409458 CXorf58Q96LI9 332 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 RNF5Q99942 180 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 COMMD5Q9GZQ3 224 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 FBXL15Q9H469 300 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 NDUFA4L2Q9NRX3 87 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 HIF1ANQ9NWT6 349 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 PLA2G2EQ9NZK7 142 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 METTL1Q9UBP6 276 aaKnown RBP11.27□□□□□ -0.61
GPNMB-203ENST00000409458 SIGLEC9Q9Y336 463 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 AUP1Q9Y679 476 aa11.27□□□□□ -0.61
GPNMB-203ENST00000409458 A0A1B0GW64 132 aa11.26□□□□□ -0.61
GPNMB-203ENST00000409458 MOSP00540 346 aa11.26□□□□□ -0.61
GPNMB-203ENST00000409458 OR8U8P0C7N1 319 aa11.26□□□□□ -0.61
GPNMB-203ENST00000409458 SPP1P10451 314 aa11.26□□□□□ -0.61
GPNMB-203ENST00000409458 APCP25054 2843 aa11.26□□□□□ -0.61
GPNMB-203ENST00000409458 F2RL1P55085 397 aa11.26□□□□□ -0.61
GPNMB-203ENST00000409458 RPP30P78346 268 aaKnown RBP11.26□□□□□ -0.61
GPNMB-203ENST00000409458 PRSS8Q16651 343 aa11.26□□□□□ -0.61
GPNMB-203ENST00000409458 SLC24A4Q8NFF2 622 aa11.26□□□□□ -0.61
GPNMB-203ENST00000409458 OR1L8Q8NGR8 309 aa11.26□□□□□ -0.61
GPNMB-203ENST00000409458 MALSU1Q96EH3 234 aa11.26□□□□□ -0.61
GPNMB-203ENST00000409458 EAF1Q96JC9 268 aaPredicted RBP11.26□□□□□ -0.61
GPNMB-203ENST00000409458 RFNGQ9Y644 331 aa11.26□□□□□ -0.61
GPNMB-203ENST00000409458 ABCA12Q86UK0 2595 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms