RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 TUBA4BQ9H853 241 aa12.23□□□□□ -0.45
CUX2-202ENST00000397643 RANGRFQ9HD47 186 aaPredicted RBP12.23□□□□□ -0.45
CUX2-202ENST00000397643 SLC2A8Q9NY64 477 aa12.23□□□□□ -0.45
CUX2-202ENST00000397643 IZUMO1RA6ND01 250 aa12.22□□□□□ -0.45
CUX2-202ENST00000397643 OR5H14A6NHG9 310 aa12.22□□□□□ -0.45
CUX2-202ENST00000397643 UCP3P55916 312 aa12.22□□□□□ -0.45
CUX2-202ENST00000397643 PLGLAQ15195 96 aa12.22□□□□□ -0.45
CUX2-202ENST00000397643 MSMO1Q15800 293 aa12.22□□□□□ -0.45
CUX2-202ENST00000397643 RPL39P5Q59GN2 51 aa12.22□□□□□ -0.45
CUX2-202ENST00000397643 LHFPL1Q86WI0 220 aa12.22□□□□□ -0.45
CUX2-202ENST00000397643 ZBTB34Q8NCN2 500 aa12.22□□□□□ -0.45
CUX2-202ENST00000397643 LINC00476Q8WZB0 136 aa12.22□□□□□ -0.45
CUX2-202ENST00000397643 FXYD6Q9H0Q3 95 aa12.22□□□□□ -0.45
CUX2-202ENST00000397643 SDHAF2Q9NX18 166 aa12.22□□□□□ -0.45
CUX2-202ENST00000397643 DNAH10Q8IVF4 4471 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 M0R1X1 148 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 CA2P00918 260 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 CSN3P07498 182 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 PGAM2P15259 253 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 SYNJ2BPP57105 145 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 SSBP2P81877 361 aaPredicted RBP12.21□□□□□ -0.45
CUX2-202ENST00000397643 AADACL3Q5VUY0 350 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 IDO2Q6ZQW0 420 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 GTSCR1Q86UQ5 136 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 SLC38A6Q8IZM9 456 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 POC5Q8NA72 575 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 OR5AN1Q8NGI8 311 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 ZFAND1Q8TCF1 268 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 SCGB3A2Q96PL1 93 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 CLCC1Q96S66 551 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 CCL28Q9NRJ3 127 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 SIGLEC8Q9NYZ4 499 aa12.21□□□□□ -0.45
CUX2-202ENST00000397643 ANKRD34BA5PLL1 514 aa12.2□□□□□ -0.46
CUX2-202ENST00000397643 PLA2G10O15496 165 aa12.2□□□□□ -0.46
CUX2-202ENST00000397643 LYRM1O43325 122 aa12.2□□□□□ -0.46
CUX2-202ENST00000397643 S100GP29377 79 aa12.2□□□□□ -0.46
CUX2-202ENST00000397643 MECP2P51608 486 aaKnown RBP12.2□□□□□ -0.46
CUX2-202ENST00000397643 PSG5Q15238 335 aa12.2□□□□□ -0.46
CUX2-202ENST00000397643 MZT2BQ6NZ67 158 aa12.2□□□□□ -0.46
CUX2-202ENST00000397643 CMTM1Q8IZ96 169 aa12.2□□□□□ -0.46
CUX2-202ENST00000397643 PLEKHA3Q9HB20 300 aa12.2□□□□□ -0.46
CUX2-202ENST00000397643 METTL1Q9UBP6 276 aaKnown RBP12.2□□□□□ -0.46
CUX2-202ENST00000397643 WASHC3Q9Y3C0 194 aa12.2□□□□□ -0.46
CUX2-202ENST00000397643 H3BUA1 57 aa12.19□□□□□ -0.46
CUX2-202ENST00000397643 GPR31O00270 319 aa12.19□□□□□ -0.46
CUX2-202ENST00000397643 TRBV12-3P01733 135 aa12.19□□□□□ -0.46
CUX2-202ENST00000397643 GNRHRP30968 328 aa12.19□□□□□ -0.46
CUX2-202ENST00000397643 DEFA1P59665 94 aa12.19□□□□□ -0.46
CUX2-202ENST00000397643 DEFA3P59666 94 aa12.19□□□□□ -0.46
CUX2-202ENST00000397643 DEFA5Q01523 94 aa12.19□□□□□ -0.46
CUX2-202ENST00000397643 SURF2Q15527 256 aaPredicted RBP12.19□□□□□ -0.46
CUX2-202ENST00000397643 LCN12Q6JVE5 192 aa12.19□□□□□ -0.46
CUX2-202ENST00000397643 ZNF66Q6ZN08 573 aa12.19□□□□□ -0.46
CUX2-202ENST00000397643 OR13C8Q8NGS7 320 aa12.19□□□□□ -0.46
CUX2-202ENST00000397643 MARCH1Q8TCQ1 289 aa12.19□□□□□ -0.46
CUX2-202ENST00000397643 ADTRPQ96IZ2 230 aa12.19□□□□□ -0.46
CUX2-202ENST00000397643 RNF5Q99942 180 aa12.19□□□□□ -0.46
CUX2-202ENST00000397643 SLC25A21Q9BQT8 299 aaPredicted RBP12.19□□□□□ -0.46
CUX2-202ENST00000397643 C13orf42A0A1B0GVH6 325 aa12.18□□□□□ -0.46
CUX2-202ENST00000397643 RBMY1BA6NDE4 496 aaKnown RBP12.18□□□□□ -0.46
CUX2-202ENST00000397643 RBMY1EA6NEQ0 496 aaKnown RBP12.18□□□□□ -0.46
CUX2-202ENST00000397643 PROP1O75360 226 aa12.18□□□□□ -0.46
CUX2-202ENST00000397643 IGLV2-14P01704 120 aa12.18□□□□□ -0.46
CUX2-202ENST00000397643 IGKV1-16P04430 117 aa12.18□□□□□ -0.46
CUX2-202ENST00000397643 RBMY1DP0C7P1 496 aaKnown RBP12.18□□□□□ -0.46
CUX2-202ENST00000397643 MC5RP33032 325 aa12.18□□□□□ -0.46
CUX2-202ENST00000397643 IFITM3Q01628 133 aa12.18□□□□□ -0.46
CUX2-202ENST00000397643 TAGLNQ01995 201 aaKnown RBP12.18□□□□□ -0.46
CUX2-202ENST00000397643 ASAH1Q13510 395 aa12.18□□□□□ -0.46
CUX2-202ENST00000397643 ZNF818PQ6ZRF7 136 aa12.18□□□□□ -0.46
CUX2-202ENST00000397643 BVESQ8NE79 360 aa12.18□□□□□ -0.46
CUX2-202ENST00000397643 GRPEL2Q8TAA5 225 aa12.18□□□□□ -0.46
CUX2-202ENST00000397643 C5orf30Q96GV9 206 aa12.18□□□□□ -0.46
CUX2-202ENST00000397643 ZNF486Q96H40 463 aaPredicted RBP12.18□□□□□ -0.46
CUX2-202ENST00000397643 HSD17B10Q99714 261 aaKnown RBP12.18□□□□□ -0.46
CUX2-202ENST00000397643 C14orf166Q9Y224 244 aaKnown RBP12.18□□□□□ -0.46
CUX2-202ENST00000397643 H7C2Y5 167 aa12.17□□□□□ -0.46
CUX2-202ENST00000397643 SPDEFO95238 335 aa12.17□□□□□ -0.46
CUX2-202ENST00000397643 APOA2P02652 100 aa12.17□□□□□ -0.46
CUX2-202ENST00000397643 CTSDP07339 412 aaPredicted RBP12.17□□□□□ -0.46
CUX2-202ENST00000397643 DUTP33316 252 aaKnown RBP12.17□□□□□ -0.46
CUX2-202ENST00000397643 FXYD3Q14802 87 aa12.17□□□□□ -0.46
CUX2-202ENST00000397643 RBMS2Q15434 407 aaKnown RBP12.17□□□□□ -0.46
CUX2-202ENST00000397643 PHLDA2Q53GA4 152 aa12.17□□□□□ -0.46
CUX2-202ENST00000397643 DRAXINQ8NBI3 349 aaPredicted RBP12.17□□□□□ -0.46
CUX2-202ENST00000397643 OR5T1Q8NG75 326 aa12.17□□□□□ -0.46
CUX2-202ENST00000397643 MRGPRFQ96AM1 343 aa12.17□□□□□ -0.46
CUX2-202ENST00000397643 WFDC10AQ9H1F0 79 aa12.17□□□□□ -0.46
CUX2-202ENST00000397643 ZNF355PQ9NSJ1 428 aa12.17□□□□□ -0.46
CUX2-202ENST00000397643 TBC1D24Q9ULP9 559 aa12.17□□□□□ -0.46
CUX2-202ENST00000397643 PRELID3BQ9Y3B1 194 aa12.17□□□□□ -0.46
CUX2-202ENST00000397643 HECTD4Q9Y4D8 3996 aa12.17□□□□□ -0.46
CUX2-202ENST00000397643 A0A0G2JLM5 398 aa12.16□□□□□ -0.46
CUX2-202ENST00000397643 TNFSF12O43508 249 aa12.16□□□□□ -0.46
CUX2-202ENST00000397643 RBMXL2O75526 392 aaKnown RBP12.16□□□□□ -0.46
CUX2-202ENST00000397643 PGLYRP1O75594 196 aaPredicted RBP12.16□□□□□ -0.46
CUX2-202ENST00000397643 BRI3O95415 125 aa12.16□□□□□ -0.46
CUX2-202ENST00000397643 CCR6P51684 374 aa12.16□□□□□ -0.46
CUX2-202ENST00000397643 LINC00205P59089 165 aa12.16□□□□□ -0.46
CUX2-202ENST00000397643 CATR1Q13166 79 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms