RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ERVFC1-1P60608 527 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 ERVK-16P61578 105 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 NUTF2P61970 127 aaKnown RBP10.48□□□□□ -0.73
SHMT1-205ENST00000395684 C1orf194Q5T5A4 169 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 C9orf106Q8NAJ2 232 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 LEAP2Q969E1 77 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 ATG101Q9BSB4 218 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 FRMD6-AS1P0C7T7 363 aa10.47□□□□□ -0.73
SHMT1-205ENST00000395684 MSMPQ1L6U9 139 aa10.47□□□□□ -0.73
SHMT1-205ENST00000395684 CR1LQ2VPA4 569 aa10.47□□□□□ -0.73
SHMT1-205ENST00000395684 SPRNQ5BIV9 151 aa10.47□□□□□ -0.73
SHMT1-205ENST00000395684 STPG3Q8N7X2 389 aa10.47□□□□□ -0.73
SHMT1-205ENST00000395684 DDB2Q92466 427 aa10.47□□□□□ -0.73
SHMT1-205ENST00000395684 NEU1Q99519 415 aa10.47□□□□□ -0.73
SHMT1-205ENST00000395684 IGHV2OR16-5A0A0B4J2B6 119 aa10.47□□□□□ -0.73
SHMT1-205ENST00000395684 IGHV1-18A0A0C4DH31 117 aa10.47□□□□□ -0.73
SHMT1-205ENST00000395684 SRRM5B3KS81 715 aa10.47□□□□□ -0.73
SHMT1-205ENST00000395684 CDX4O14627 284 aaPredicted RBP10.47□□□□□ -0.73
SHMT1-205ENST00000395684 SELENOTP62341 195 aa10.47□□□□□ -0.73
SHMT1-205ENST00000395684 ZNF90Q03938 601 aa10.47□□□□□ -0.73
SHMT1-205ENST00000395684 MBNL2Q5VZF2 373 aaKnown RBP10.47□□□□□ -0.73
SHMT1-205ENST00000395684 KIR2DL5BA0A0G2JN68 375 aa10.46□□□□□ -0.73
SHMT1-205ENST00000395684 KIR2DL5BA0A0G2JPC4 375 aa10.46□□□□□ -0.73
SHMT1-205ENST00000395684 A0A1B0GWJ7 208 aa10.46□□□□□ -0.73
SHMT1-205ENST00000395684 TCAPO15273 167 aa10.46□□□□□ -0.73
SHMT1-205ENST00000395684 IGLV1-44P01699 117 aa10.46□□□□□ -0.73
SHMT1-205ENST00000395684 IGHG3P01860 377 aa10.46□□□□□ -0.73
SHMT1-205ENST00000395684 TEPPQ6URK8 271 aa10.46□□□□□ -0.73
SHMT1-205ENST00000395684 LRP11Q86VZ4 500 aa10.46□□□□□ -0.73
SHMT1-205ENST00000395684 KIR2DL5AQ8N109 375 aa10.46□□□□□ -0.73
SHMT1-205ENST00000395684 GCSAMQ8N6F7 178 aa10.46□□□□□ -0.73
SHMT1-205ENST00000395684 CMTM2Q8TAZ6 248 aa10.46□□□□□ -0.73
SHMT1-205ENST00000395684 IL36BQ9NZH7 164 aa10.46□□□□□ -0.73
SHMT1-205ENST00000395684 TRGV8A0A0C4DH27 118 aa10.46□□□□□ -0.74
SHMT1-205ENST00000395684 F2RL2O00254 374 aa10.46□□□□□ -0.74
SHMT1-205ENST00000395684 MGST3O14880 152 aa10.46□□□□□ -0.74
SHMT1-205ENST00000395684 MYOD1P15172 320 aa10.46□□□□□ -0.74
SHMT1-205ENST00000395684 OR10J1P30954 320 aa10.46□□□□□ -0.74
SHMT1-205ENST00000395684 HES3Q5TGS1 186 aa10.46□□□□□ -0.74
SHMT1-205ENST00000395684 OPN3Q9H1Y3 402 aaPredicted RBP10.46□□□□□ -0.74
SHMT1-205ENST00000395684 C15orf61A6NNL5 157 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 AHRRA9YTQ3 701 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 CACNA1HO95180 2353 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 TDRG1Q3Y452 100 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 Q6ZWC4 215 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 C1orf162Q8NEQ5 155 aaPredicted RBP10.45□□□□□ -0.74
SHMT1-205ENST00000395684 OR4P4Q8NGL7 312 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 ZCCHC14Q8WYQ9 949 aaKnown RBP10.45□□□□□ -0.74
SHMT1-205ENST00000395684 TBX15Q96SF7 602 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 CHODLQ9H9P2 273 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 DMXL1Q9Y485 3027 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 ZNF705FA8MVS1 300 aaPredicted RBP10.45□□□□□ -0.74
SHMT1-205ENST00000395684 CGAP01215 116 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 ZNF705DP0CH99 300 aaPredicted RBP10.45□□□□□ -0.74
SHMT1-205ENST00000395684 ZNF705BP0CI00 300 aaPredicted RBP10.45□□□□□ -0.74
SHMT1-205ENST00000395684 IGFBP2P18065 325 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 NPY1RP25929 384 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 RHOBP62745 196 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 KRTCAP3Q53RY4 240 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 CT45A1Q5HYN5 189 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 OR4A47Q6IF82 309 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 SLC24A4Q8NFF2 622 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 CT45A3Q8NHU0 189 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 MRPL18Q9H0U6 180 aaKnown RBP10.45□□□□□ -0.74
SHMT1-205ENST00000395684 TUBG2Q9NRH3 451 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 TMEM106BQ9NUM4 274 aa10.45□□□□□ -0.74
SHMT1-205ENST00000395684 CA2P00918 260 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 RPL29P47914 159 aaKnown RBP10.44□□□□□ -0.74
SHMT1-205ENST00000395684 OR5I1Q13606 314 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 OR4S2Q8NH73 311 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 C11orf52Q96A22 123 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 EAF1Q96JC9 268 aaPredicted RBP10.44□□□□□ -0.74
SHMT1-205ENST00000395684 CALYQ9NYX4 217 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 CFAP47Q6ZTR5 3102 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 TRGV10A0A0A0MS01 117 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 F2Z2F3 143 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 SERF1AO75920 110 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 CGB3P0DN86 165 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 CGB7P0DN87 165 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 LGALS4P56470 323 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 PRR20EP86478 221 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 PRR20CP86479 221 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 PRR20DP86480 221 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 PRR20BP86481 221 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 PRR20AP86496 221 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 ZNF124Q15973 351 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 C17orf58Q2M2W7 97 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 MIR17HGQ75NE6 70 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 TMEM14BQ9NUH8 114 aa10.44□□□□□ -0.74
SHMT1-205ENST00000395684 SAA2-SAA4A0A096LPE2 208 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 C9JCJ5 164 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 ACTL6BO94805 426 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 LINC00869P0C866 280 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 SAA2P0DJI9 122 aaPredicted RBP10.43□□□□□ -0.74
SHMT1-205ENST00000395684 CRISP2P16562 243 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 HSPE1P61604 102 aaKnown RBP10.43□□□□□ -0.74
SHMT1-205ENST00000395684 FAM201AQ5SY85 155 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 FAM122AQ96E09 287 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 FOXA2Q9Y261 457 aaPredicted RBP10.43□□□□□ -0.74
SHMT1-205ENST00000395684 HEATR1Q9H583 2144 aaKnown RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms