RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ZNF57Q68EA5 555 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-202ENST00000394943 Q6ZRM9 215 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 NRARPQ7Z6K4 114 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 POC5Q8NA72 575 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 ARPC1AQ92747 370 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 MCUBQ9NWR8 336 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 FLNBO75369 2602 aaKnown RBP5.47□□□□□ -1.53
LIMA1-202ENST00000394943 hCG_2014768A0A024R1R8 64 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 FAM223BA6NKX1 122 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 PGAM2P15259 253 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 SPNP16150 400 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 RNASE12Q5GAN4 147 aaKnown RBP5.47□□□□□ -1.53
LIMA1-202ENST00000394943 FAM223AQ8IWN6 122 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 OR2C3Q8N628 320 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 OR1L8Q8NGR8 309 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 GPR146Q96CH1 333 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 E7EUB6 86 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 SCAF4O95104 1147 aaKnown RBP5.47□□□□□ -1.53
LIMA1-202ENST00000394943 TRAPPC2P0DI81 140 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 TRAPPC2BP0DI82 140 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 HIST1H1BP16401 226 aaKnown RBP5.47□□□□□ -1.53
LIMA1-202ENST00000394943 SPCS3P61009 180 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 HSPE1P61604 102 aaKnown RBP5.47□□□□□ -1.53
LIMA1-202ENST00000394943 MMDQ15546 238 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 SCGB2B2Q4G0G5 96 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 ABCA11PQ4W5N1 156 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 PHLDA2Q53GA4 152 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 SLC35G3Q8N808 338 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 FANCD2OSQ96PS1 177 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 FBXL15Q9H469 300 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 SLA2Q9H6Q3 261 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 FBN1P35555 2871 aaKnown RBP5.47□□□□□ -1.53
LIMA1-202ENST00000394943 A0A1W2PN81 502 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 I3L521 148 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 SHOXO15266 292 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 ATP6V0E1O15342 81 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 PAX6P26367 422 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 CHRNA7P36544 502 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 CDX1P47902 265 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-202ENST00000394943 RPS16P62249 146 aaKnown RBP5.47□□□□□ -1.53
LIMA1-202ENST00000394943 SMCO1Q147U7 214 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 C2orf83Q53S99 150 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 PRR31Q5SQ13 230 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 SLC35E3Q7Z769 313 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 TMEM219Q86XT9 240 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 ZNF491Q8N8L2 437 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 VN1R17PQ8TDU5 208 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 UBE2E2Q96LR5 201 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 TXN2Q99757 166 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 NMES1Q9C002 83 aa5.47□□□□□ -1.53
LIMA1-202ENST00000394943 TRAV3A0A0B4J244 114 aa5.46□□□□□ -1.53
LIMA1-202ENST00000394943 LINC01548A6NM66 108 aa5.46□□□□□ -1.53
LIMA1-202ENST00000394943 MDKP21741 143 aaPredicted RBP5.46□□□□□ -1.53
LIMA1-202ENST00000394943 DRAXINQ8NBI3 349 aaPredicted RBP5.46□□□□□ -1.53
LIMA1-202ENST00000394943 C4orf3Q8WVX3 66 aa5.46□□□□□ -1.53
LIMA1-202ENST00000394943 SRSF12Q8WXF0 261 aaKnown RBP5.46□□□□□ -1.53
LIMA1-202ENST00000394943 USMG5Q96IX5 58 aa5.46□□□□□ -1.53
LIMA1-202ENST00000394943 FLVCR2Q9UPI3 526 aa5.46□□□□□ -1.53
LIMA1-202ENST00000394943 F8P00451 2351 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 IGHV3-72A0A0B4J1Y9 119 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 TRAV41A0A0B4J266 112 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 PMS2P5A8MQ11 134 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 TNFSF12O43508 249 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 SLC25A17O43808 307 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 SOX15O60248 233 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 SULT1A3P0DMM9 295 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 SULT1A4P0DMN0 295 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 C4orf46Q504U0 113 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 ZNF343Q6P1L6 599 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 SHISA2Q6UWI4 295 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 COQ8AQ8NI60 647 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 ABHD5Q8WTS1 349 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 SIGLEC8Q9NYZ4 499 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.46□□□□□ -1.54
LIMA1-202ENST00000394943 K7EPK0 472 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 Q6ZNX1 250 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 OR1P1Q8NH06 330 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 SPIN2AQ99865 258 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 SPIN2BQ9BPZ2 258 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 QTRT1Q9BXR0 403 aaKnown RBP5.46□□□□□ -1.54
LIMA1-202ENST00000394943 ZNF436Q9C0F3 470 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-202ENST00000394943 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-202ENST00000394943 RNF114Q9Y508 228 aa5.46□□□□□ -1.54
LIMA1-202ENST00000394943 F11RQ9Y624 299 aaKnown RBP5.46□□□□□ -1.54
LIMA1-202ENST00000394943 F8W735 103 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-202ENST00000394943 FBXO24O75426 580 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 SERPINE2P07093 398 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 ANXA7P20073 488 aaKnown RBP5.45□□□□□ -1.54
LIMA1-202ENST00000394943 G6PCP35575 357 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 VWC2Q2TAL6 325 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 WFDC9Q8NEX5 89 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 OR2T6Q8NHC8 308 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 TMEM170AQ8WVE7 144 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 ST8SIA3O43173 380 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 CD24P25063 80 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 RPL27AP46776 148 aaKnown RBP5.45□□□□□ -1.54
LIMA1-202ENST00000394943 ERVK-16P61578 105 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 WT1-ASQ06250 92 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 TMEM267Q0VDI3 215 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-202ENST00000394943 PJVKQ0ZLH3 352 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms