RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 LHX4Q969G2 390 aa12.26□□□□□ -0.45
GPC3-202ENST00000394299 FAM122AQ96E09 287 aa12.26□□□□□ -0.45
GPC3-202ENST00000394299 C1orf159Q96HA4 380 aa12.26□□□□□ -0.45
GPC3-202ENST00000394299 RITA1Q96K30 269 aa12.26□□□□□ -0.45
GPC3-202ENST00000394299 PRORYQ9H606 182 aa12.26□□□□□ -0.45
GPC3-202ENST00000394299 IGHV3-72A0A0B4J1Y9 119 aa12.26□□□□□ -0.45
GPC3-202ENST00000394299 H0YJW9 148 aa12.26□□□□□ -0.45
GPC3-202ENST00000394299 CA2P00918 260 aa12.26□□□□□ -0.45
GPC3-202ENST00000394299 RTL8BQ17RB0 113 aa12.26□□□□□ -0.45
GPC3-202ENST00000394299 TREML4Q6UXN2 200 aa12.26□□□□□ -0.45
GPC3-202ENST00000394299 ZNF841Q6ZN19 808 aa12.26□□□□□ -0.45
GPC3-202ENST00000394299 FOXA2Q9Y261 457 aaPredicted RBP12.26□□□□□ -0.45
GPC3-202ENST00000394299 TIMM9Q9Y5J7 89 aa12.26□□□□□ -0.45
GPC3-202ENST00000394299 E7EUB6 86 aa12.25□□□□□ -0.45
GPC3-202ENST00000394299 UPK2O00526 184 aa12.25□□□□□ -0.45
GPC3-202ENST00000394299 SOD3P08294 240 aa12.25□□□□□ -0.45
GPC3-202ENST00000394299 IL6RP08887 468 aaPredicted RBP12.25□□□□□ -0.45
GPC3-202ENST00000394299 IGHV1-8P0DP01 117 aa12.25□□□□□ -0.45
GPC3-202ENST00000394299 UQCRFS1P47985 274 aa12.25□□□□□ -0.45
GPC3-202ENST00000394299 PDLIM3Q53GG5 364 aaPredicted RBP12.25□□□□□ -0.45
GPC3-202ENST00000394299 OR10A7Q8NGE5 316 aa12.25□□□□□ -0.45
GPC3-202ENST00000394299 OR10W1Q8NGF6 305 aa12.25□□□□□ -0.45
GPC3-202ENST00000394299 WDR83OSQ9Y284 106 aa12.25□□□□□ -0.45
GPC3-202ENST00000394299 PKD1L2Q7Z442 2459 aa12.25□□□□□ -0.45
GPC3-202ENST00000394299 COLCA2A8K830 154 aa12.25□□□□□ -0.45
GPC3-202ENST00000394299 H3BQ15 152 aa12.25□□□□□ -0.45
GPC3-202ENST00000394299 MLANAQ16655 118 aa12.25□□□□□ -0.45
GPC3-202ENST00000394299 MOB3BQ86TA1 216 aa12.25□□□□□ -0.45
GPC3-202ENST00000394299 ZNF709Q8N972 641 aa12.25□□□□□ -0.45
GPC3-202ENST00000394299 PLXNB1O43157 2135 aa12.24□□□□□ -0.45
GPC3-202ENST00000394299 TEX50A0A1B0GTY4 177 aa12.24□□□□□ -0.45
GPC3-202ENST00000394299 A0A1W2PPE2 198 aa12.24□□□□□ -0.45
GPC3-202ENST00000394299 A0A1W2PPR1 153 aa12.24□□□□□ -0.45
GPC3-202ENST00000394299 HSPB1P04792 205 aaKnown RBP12.24□□□□□ -0.45
GPC3-202ENST00000394299 RAB11AP62491 216 aa12.24□□□□□ -0.45
GPC3-202ENST00000394299 POU2AF1Q16633 256 aa12.24□□□□□ -0.45
GPC3-202ENST00000394299 TMEM30BQ3MIR4 351 aa12.24□□□□□ -0.45
GPC3-202ENST00000394299 ARSJQ5FYB0 599 aaPredicted RBP12.24□□□□□ -0.45
GPC3-202ENST00000394299 RAB24Q969Q5 203 aa12.24□□□□□ -0.45
GPC3-202ENST00000394299 HARBI1Q96MB7 349 aa12.24□□□□□ -0.45
GPC3-202ENST00000394299 NABP2Q9BQ15 211 aa12.24□□□□□ -0.45
GPC3-202ENST00000394299 TMEM204Q9BSN7 226 aa12.24□□□□□ -0.45
GPC3-202ENST00000394299 PATZ1Q9HBE1 687 aaKnown RBP12.24□□□□□ -0.45
GPC3-202ENST00000394299 AKAP6Q13023 2319 aa12.24□□□□□ -0.45
GPC3-202ENST00000394299 ZNF727A8MUV8 499 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 KBTBD11O94819 623 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 BCL2P10415 239 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 KHDC3LQ587J8 217 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 SLC24A4Q8NFF2 622 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 OR5AN1Q8NGI8 311 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 ST6GALNAC6Q969X2 333 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 IGHV2-70P01814 119 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 NPY1RP25929 384 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 RPP30P78346 268 aaKnown RBP12.23□□□□□ -0.45
GPC3-202ENST00000394299 MIC13Q5XKP0 118 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 SSMEM1Q8WWF3 244 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 MGST2Q99735 147 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 SMDT1Q9H4I9 107 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 SMCO4Q9NRQ5 59 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 ZMAT5Q9UDW3 170 aaKnown RBP12.23□□□□□ -0.45
GPC3-202ENST00000394299 MED13LQ71F56 2210 aa12.23□□□□□ -0.45
GPC3-202ENST00000394299 CRYBA1P05813 215 aa12.22□□□□□ -0.45
GPC3-202ENST00000394299 FLYWCH2Q96CP2 140 aaKnown RBP12.22□□□□□ -0.45
GPC3-202ENST00000394299 RAB39BQ96DA2 213 aa12.22□□□□□ -0.45
GPC3-202ENST00000394299 ENY2Q9NPA8 101 aa12.22□□□□□ -0.45
GPC3-202ENST00000394299 YIF1AO95070 293 aa12.22□□□□□ -0.45
GPC3-202ENST00000394299 C10orf55Q5SWW7 151 aa12.22□□□□□ -0.45
GPC3-202ENST00000394299 IGFBPL1Q8WX77 278 aa12.22□□□□□ -0.45
GPC3-202ENST00000394299 PRNDQ9UKY0 176 aa12.22□□□□□ -0.45
GPC3-202ENST00000394299 SPTAN1Q13813 2472 aaKnown RBP12.22□□□□□ -0.45
GPC3-202ENST00000394299 A0A1W2PPH5 198 aa12.21□□□□□ -0.45
GPC3-202ENST00000394299 APOA2P02652 100 aa12.21□□□□□ -0.45
GPC3-202ENST00000394299 FAM90A2PQ658T7 463 aa12.21□□□□□ -0.45
GPC3-202ENST00000394299 ZFP82Q8N141 532 aa12.21□□□□□ -0.45
GPC3-202ENST00000394299 OR9G1Q8NH87 305 aa12.21□□□□□ -0.45
GPC3-202ENST00000394299 TMEM133Q9H2Q1 129 aa12.21□□□□□ -0.45
GPC3-202ENST00000394299 TPSG1Q9NRR2 321 aa12.21□□□□□ -0.45
GPC3-202ENST00000394299 CTXND1A0A1B0GTU2 59 aa12.21□□□□□ -0.46
GPC3-202ENST00000394299 ENSAO43768 121 aaKnown RBP12.21□□□□□ -0.46
GPC3-202ENST00000394299 PLEKHA3Q9HB20 300 aa12.21□□□□□ -0.46
GPC3-202ENST00000394299 C17orf112F2Z3M2 114 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 NDUFS7O75251 213 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 COX7A1P24310 79 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 CD81P60033 236 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 DLK1P80370 383 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 PRCDQ00LT1 54 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 TGIF2LXQ8IUE1 241 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 FAM24BQ8N5W8 94 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 OSR1Q8TAX0 266 aaPredicted RBP12.2□□□□□ -0.46
GPC3-202ENST00000394299 ZNF596Q8TC21 504 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 TMEM186Q96B77 213 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 GGTLC1Q9BX51 225 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 ACTR3CQ9C0K3 210 aaPredicted RBP12.2□□□□□ -0.46
GPC3-202ENST00000394299 BET1LQ9NYM9 111 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 PPIAL4CA0A0B4J2A2 164 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 PPIAL4GP0DN37 164 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 GNLYP22749 145 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 PAX6P26367 422 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 TMEM177Q53S58 311 aa12.2□□□□□ -0.46
GPC3-202ENST00000394299 LINC00311Q8N616 119 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms