RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SAP25Q8TEE9 199 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 G6PC2Q9NQR9 355 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 H3BTX0 84 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 NMBP08949 121 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 COL11A1P12107 1806 aaPredicted RBP10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 LY75O60449 1722 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 TRBV7-9A0A0J9YWB2 115 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 M0R381 172 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 DRAM1Q8N682 238 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 PSMG4Q5JS54 123 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 NPIPB4C9JG80 1138 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 PEX7O00628 323 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 SP9P0CG40 484 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 CDCP2Q5VXM1 449 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 LRTM2Q8N967 370 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 MARVELD3Q96A59 401 aa10.89□□□□□ -0.67
CCDC88C-204ENST00000389857 TRAV8-6A0A0B4J262 113 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 ZNHIT1O43257 154 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 GFRA3O60609 400 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 KIAA1644Q3SXP7 199 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 TIMM23BQ5SRD1 257 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 Q6ZT83 130 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 PUSL1Q8N0Z8 303 aaKnown RBP10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 LINC01587Q99440 93 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 UNC13CQ8NB66 2214 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 IGHV3-23P01764 117 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 RNASE4P34096 147 aaKnown RBP10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 FAM169BQ8N8A8 192 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 OSR1Q8TAX0 266 aaPredicted RBP10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 GP6Q9HCN6 339 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 IL6RP08887 468 aaPredicted RBP10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 FOXL2P58012 376 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 PPP1R27Q86WC6 154 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 ATOH7Q8N100 152 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 TRAV24A0A0B4J272 114 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 DPRXA6NFQ7 191 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 C2orf68Q2NKX9 166 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 Q6AWC8 147 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 SLC25A45Q8N413 288 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 NPDC1Q9NQX5 325 aaPredicted RBP10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 HS3ST3B1Q9Y662 390 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 ARPC1AQ92747 370 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 AMELYQ99218 206 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 FBXL7Q9UJT9 491 aa10.88□□□□□ -0.67
CCDC88C-204ENST00000389857 C1QTNF12Q5T7M4 302 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 ACP7Q6ZNF0 438 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 TMEM106BQ9NUM4 274 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 TBR1Q16650 682 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 PCOLCEQ15113 449 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 TTC9CQ8N5M4 171 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 IGHV3-66A0A0C4DH42 116 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 GRIFINA4D1Z8 144 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 IGKV1D-33P01593 117 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 IGKV1-33P01594 117 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 DPH3P1Q9H4G8 78 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 IL36BQ9NZH7 164 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 LEPP41159 167 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 ASPHD2Q6ICH7 369 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 FAM168AQ92567 244 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 DPM3Q9P2X0 92 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 FOXA2Q9Y261 457 aaPredicted RBP10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 GLRXP35754 106 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 APCDD1LQ8NCL9 501 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 NPCDR1Q9BY65 106 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 IFI27L2Q9H2X8 130 aa10.87□□□□□ -0.67
CCDC88C-204ENST00000389857 NPIPB13A6NJU9 1138 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 NBEAP1P0C6P0 100 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 GPHA2Q96T91 129 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 SDHCQ99643 169 aaPredicted RBP10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 C19orf48Q6RUI8 117 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 POC1AQ8NBT0 407 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 C18orf15Q96N68 181 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 C19orf67A6NJJ6 358 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 WISP3O95389 354 aaPredicted RBP10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 ZNF688P0C7X2 276 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 OR11H4Q8NGC9 324 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 LINC01560Q8TB33 94 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 MBD3L1Q8WWY6 194 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 STRCP1A6NGW2 1772 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 APOHP02749 345 aaPredicted RBP10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 RPL39P5Q59GN2 51 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 DMRT1Q9Y5R6 373 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 TRGV2A0A075B6R0 118 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 A0A1B0GUT8 65 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 ZIC3O60481 467 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 A0A1B0GV72 72 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 GCM2O75603 506 aaPredicted RBP10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 RNASEH2CQ8TDP1 164 aaKnown RBP10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 PHLDA1Q8WV24 401 aaPredicted RBP10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 TOMM7Q9P0U1 55 aa10.86□□□□□ -0.67
CCDC88C-204ENST00000389857 IGHV3-48P01763 117 aa10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 FUT5Q11128 374 aa10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 KCNS1Q96KK3 526 aa10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 COLQQ9Y215 455 aaPredicted RBP10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 FOXC2Q99958 501 aa10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 RPP21Q9H633 154 aaKnown RBP10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 C1orf162Q8NEQ5 155 aaPredicted RBP10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 SLC25A38Q96DW6 304 aa10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 CKAP5Q14008 2032 aa10.85□□□□□ -0.67
CCDC88C-204ENST00000389857 KIR3DL3Q8N743 410 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms