RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 KLK6Q92876 244 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 FAM96AQ9H5X1 160 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 LSM5Q9Y4Y9 91 aaKnown RBP0.78□□□□□ -2.28
VPS13A-206ENST00000376646 TIMM9Q9Y5J7 89 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 SNAPC4Q5SXM2 1469 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 FLT4P35916 1363 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 A0A0J9YW62 118 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 A0A1B0GW54 56 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 KCNK1O00180 336 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 CREBL2O60519 120 aaPredicted RBP0.78□□□□□ -2.28
VPS13A-206ENST00000376646 AHSA1O95433 338 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 KRT75O95678 551 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 PPBPP02775 128 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 LGALS1P09382 135 aaKnown RBP0.78□□□□□ -2.28
VPS13A-206ENST00000376646 HIST1H1EP10412 219 aaKnown RBP0.78□□□□□ -2.28
VPS13A-206ENST00000376646 S100A7P31151 101 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 HAAOP46952 286 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 CSN1S1P47710 185 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 OR4D2P58180 307 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 MYL6P60660 151 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 RAB5BP61020 215 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 AKR1C1Q04828 323 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 LYZL1Q6UWQ5 148 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 ZNF625Q96I27 306 aaPredicted RBP0.78□□□□□ -2.28
VPS13A-206ENST00000376646 PAQR5Q9NXK6 330 aaPredicted RBP0.78□□□□□ -2.28
VPS13A-206ENST00000376646 NAT8Q9UHE5 227 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 ANGPT4Q9Y264 503 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 AMMECR1Q9Y4X0 333 aaPredicted RBP0.78□□□□□ -2.28
VPS13A-206ENST00000376646 ZFHX2Q9C0A1 2572 aaPredicted RBP0.78□□□□□ -2.29
VPS13A-206ENST00000376646 DOCK10Q96BY6 2186 aa0.78□□□□□ -2.29
VPS13A-206ENST00000376646 IGHV3-64A0A075B6Q5 118 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 TRAV38-1A0A0B4J264 116 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 ZNF705FA8MVS1 300 aaPredicted RBP0.77□□□□□ -2.29
VPS13A-206ENST00000376646 LEPROTO15243 131 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 LYPLA2O95372 231 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 PSMB8P28062 276 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 HLA-DMBP28068 263 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 IDH3GP51553 393 aaPredicted RBP0.77□□□□□ -2.29
VPS13A-206ENST00000376646 RAB14P61106 215 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 GLO1Q04760 184 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 PMAIP1Q13794 54 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 IMPG1Q17R60 797 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 KIAA2026Q5HYC2 2103 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 CCDC122Q5T0U0 273 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 KTN1-AS1Q86SY8 53 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 TMEM86BQ8N661 226 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 MNS1Q8NEH6 495 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 OR1M1Q8NGA1 313 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 OR5B17Q8NGF7 314 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 OR8J2Q8NGG1 315 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 CNBD2Q96M20 576 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 VCX3BQ9H321 246 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 CMTM6Q9NX76 183 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 TIMM22Q9Y584 194 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 PTPRSQ13332 1948 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 NCOR1O75376 2440 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 SETXQ7Z333 2677 aaKnown RBP0.77□□□□□ -2.29
VPS13A-206ENST00000376646 PCLOQ9Y6V0 5065 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 TRAV7A0A075B6U4 112 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 EEF1E1-BLOC1S5C9J1V9 151 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 H7C2G1 150 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 M0R036 132 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 IFNA16P05015 189 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 ZNF705DP0CH99 300 aaPredicted RBP0.77□□□□□ -2.29
VPS13A-206ENST00000376646 FGF6P10767 208 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 CCL5P13501 91 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 KCNE1P15382 129 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 MSNP26038 577 aaKnown RBP0.77□□□□□ -2.29
VPS13A-206ENST00000376646 ALDH3A1P30838 453 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 AQP4P55087 323 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 SPCS3P61009 180 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 IFITM2Q01629 132 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 CAV1Q03135 178 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 TMEM155Q4W5P6 130 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 ALKAL1Q6UXT8 129 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 OR8B12Q8NGG6 310 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 ACOT12Q8WYK0 555 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 ANKRD7Q92527 254 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 SLC35B4Q969S0 331 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 ROPN1LQ96C74 230 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 ERMAPQ96PL5 475 aaPredicted RBP0.77□□□□□ -2.29
VPS13A-206ENST00000376646 OR8D2Q9GZM6 311 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 XAGE1AQ9HD64 81 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 FUT9Q9Y231 359 aa0.77□□□□□ -2.29
VPS13A-206ENST00000376646 MDC1Q14676 2089 aaKnown RBP0.76□□□□□ -2.29
VPS13A-206ENST00000376646 PTPRBP23467 1997 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 IGHV1-18A0A0C4DH31 117 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 A0A0J9YY10 115 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 A0A1B0GX78 115 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 GGT3PA6NGU5 568 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 SMIM23A6NLE4 172 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 SIGLEC16A6NMB1 481 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 RGS12O14924 1447 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 RPS17P08708 135 aaKnown RBP0.76□□□□□ -2.29
VPS13A-206ENST00000376646 SRP19P09132 144 aaKnown RBP0.76□□□□□ -2.29
VPS13A-206ENST00000376646 EMP1P54849 157 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 POLR2GP62487 172 aaKnown RBP eCLIP0.76□□□□□ -2.29
VPS13A-206ENST00000376646 OR2F1Q13607 317 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 GUK1Q16774 197 aa0.76□□□□□ -2.29
VPS13A-206ENST00000376646 C9orf64Q5T6V5 341 aa0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms