RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 LINC00587B1AMM8 73 aa10.01□□□□□ -0.81
VPS13A-205ENST00000376636 DXOO77932 396 aaKnown RBP10.01□□□□□ -0.81
VPS13A-205ENST00000376636 HSPE1P61604 102 aaKnown RBP10.01□□□□□ -0.81
VPS13A-205ENST00000376636 C1QL1O75973 258 aa10.01□□□□□ -0.81
VPS13A-205ENST00000376636 SNRPCP09234 159 aaKnown RBP10.01□□□□□ -0.81
VPS13A-205ENST00000376636 NOVP48745 357 aa10.01□□□□□ -0.81
VPS13A-205ENST00000376636 ZNF71Q9NQZ8 489 aaPredicted RBP10.01□□□□□ -0.81
VPS13A-205ENST00000376636 EDIL3O43854 480 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 AGFG2O95081 481 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 TRIP6Q15654 476 aaKnown RBP10□□□□□ -0.81
VPS13A-205ENST00000376636 DPM2O94777 84 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 LIFP15018 202 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 TDGF1P3P51864 188 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 TRAV8-1A0A0A6YYK1 113 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 WDYHV1Q96HA8 205 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 OR2H2O95918 312 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 RIPPLY3P57055 190 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 RPL32P62910 135 aaKnown RBP10□□□□□ -0.81
VPS13A-205ENST00000376636 NHP2Q9NX24 153 aaKnown RBP10□□□□□ -0.81
VPS13A-205ENST00000376636 COL6A6A6NMZ7 2263 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 A0A0G2JLM5 398 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 A0A1W2PPE3 182 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 NPIPB11E5RHQ5 1161 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 LDLRAD2Q5SZI1 272 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 CT55Q8WUE5 264 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 GPR132Q9UNW8 380 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 SDK2Q58EX2 2172 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 IGHV1OR21-1A0A087WYE8 117 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 PLA2G10O15496 165 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 NABP2Q9BQ15 211 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 STRCQ7RTU9 1775 aa10□□□□□ -0.81
VPS13A-205ENST00000376636 UCNP55089 124 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 SRSF1Q07955 248 aaKnown RBP eCLIP9.99□□□□□ -0.81
VPS13A-205ENST00000376636 RPP21Q9H633 154 aaKnown RBP9.99□□□□□ -0.81
VPS13A-205ENST00000376636 ZNF79Q15937 498 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 SPANXDQ9BXN6 97 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 DYSFO75923 2080 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 A0A1B0GTL3 188 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 VWC2LB2RUY7 222 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 P2RY4P51582 365 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 ORMDL2Q53FV1 153 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 SAMD5Q5TGI4 173 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 FAM27BQ5VT28 67 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 MRPS18BQ9Y676 258 aaKnown RBP9.99□□□□□ -0.81
VPS13A-205ENST00000376636 TMPRSS3P57727 454 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 CD69Q07108 199 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 C2orf68Q2NKX9 166 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 C1orf185Q5T7R7 199 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 PMS2CLQ68D20 193 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 POC1AQ8NBT0 407 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 CALYQ9NYX4 217 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 F8WEM9 126 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 DNAJC30Q96LL9 226 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 TMEM229AB2RXF0 380 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 ZNF818PQ6ZRF7 136 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 OR11H4Q8NGC9 324 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 TMEM186Q96B77 213 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 TNRC6CQ9HCJ0 1690 aaKnown RBP9.99□□□□□ -0.81
VPS13A-205ENST00000376636 SPINT1O43278 529 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 UNC119Q13432 240 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 ST6GALNAC3Q8NDV1 305 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 AQP3Q92482 292 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 TRGV2A0A075B6R0 118 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 HIGD1CA8MV81 97 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 UCP2P55851 309 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 DTX1Q86Y01 620 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 SAXO1Q8IYX7 474 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 CLEC7AQ9BXN2 247 aa9.99□□□□□ -0.81
VPS13A-205ENST00000376636 PTPRDP23468 1912 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 APCDD1LQ8NCL9 501 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 R4GN57 208 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 PTP4A3O75365 173 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 ERVK11-1P61568 191 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 NHLRC3Q5JS37 347 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 CCL21O00585 134 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 DCAF12L2Q5VW00 463 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 ZNF48Q96MX3 618 aaPredicted RBP9.98□□□□□ -0.81
VPS13A-205ENST00000376636 GCHFRP30047 84 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 PGLYRP1O75594 196 aaPredicted RBP9.98□□□□□ -0.81
VPS13A-205ENST00000376636 CCL8P80075 99 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 COQ2Q96H96 371 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 CITED1Q99966 193 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 TOMM40O96008 361 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 SNAI3Q3KNW1 292 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 SELENOHQ8IZQ5 122 aaKnown RBP9.98□□□□□ -0.81
VPS13A-205ENST00000376636 TNFRSF6BO95407 300 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 TMEM155Q4W5P6 130 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 CCL13Q99616 98 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 JPT2Q9H910 190 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 PSME4Q14997 1843 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 LOC390937A0A1W2PQ73 354 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 SNAI2O43623 268 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 HYAL3O43820 417 aaPredicted RBP9.98□□□□□ -0.81
VPS13A-205ENST00000376636 FOXA3P55318 350 aaPredicted RBP9.98□□□□□ -0.81
VPS13A-205ENST00000376636 TMEM196Q5HYL7 178 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 IDI2-AS1Q9NZ38 188 aa9.98□□□□□ -0.81
VPS13A-205ENST00000376636 FER1L6-AS1Q8NA97 138 aa9.97□□□□□ -0.81
VPS13A-205ENST00000376636 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.97□□□□□ -0.81
VPS13A-205ENST00000376636 SSBP3Q9BWW4 388 aaPredicted RBP9.97□□□□□ -0.81
VPS13A-205ENST00000376636 VSIG10L2P0DP72 767 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms