RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 IGKV3-20P01619 116 aa10.72□□□□□ -0.69
VPS13A-204ENST00000376634 CD1AP06126 327 aa10.72□□□□□ -0.69
VPS13A-204ENST00000376634 RBMY1DP0C7P1 496 aaKnown RBP10.72□□□□□ -0.69
VPS13A-204ENST00000376634 RBMY1A1P0DJD3 496 aaKnown RBP10.72□□□□□ -0.69
VPS13A-204ENST00000376634 RBMY1CP0DJD4 496 aa10.72□□□□□ -0.69
VPS13A-204ENST00000376634 TMEM30BQ3MIR4 351 aa10.72□□□□□ -0.69
VPS13A-204ENST00000376634 BIVMQ86UB2 503 aa10.72□□□□□ -0.69
VPS13A-204ENST00000376634 DMRT1Q9Y5R6 373 aa10.72□□□□□ -0.69
VPS13A-204ENST00000376634 GHRHP01286 108 aa10.72□□□□□ -0.69
VPS13A-204ENST00000376634 TAF15Q92804 592 aaKnown RBP eCLIP10.72□□□□□ -0.69
VPS13A-204ENST00000376634 WBP1LQ9NX94 342 aa10.72□□□□□ -0.69
VPS13A-204ENST00000376634 ITGBL1O95965 494 aaPredicted RBP10.72□□□□□ -0.69
VPS13A-204ENST00000376634 ISG15P05161 165 aa10.72□□□□□ -0.69
VPS13A-204ENST00000376634 VKORC1L1Q8N0U8 176 aa10.72□□□□□ -0.69
VPS13A-204ENST00000376634 TPRX1Q8N7U7 411 aa10.72□□□□□ -0.69
VPS13A-204ENST00000376634 NTN1O95631 604 aa10.71□□□□□ -0.69
VPS13A-204ENST00000376634 TMEM50AO95807 157 aa10.71□□□□□ -0.69
VPS13A-204ENST00000376634 PDLIM4P50479 330 aa10.71□□□□□ -0.69
VPS13A-204ENST00000376634 TBL2Q9Y4P3 447 aaKnown RBP10.71□□□□□ -0.69
VPS13A-204ENST00000376634 UPK3AO75631 287 aa10.71□□□□□ -0.69
VPS13A-204ENST00000376634 TYMSP04818 313 aa10.71□□□□□ -0.69
VPS13A-204ENST00000376634 PTGDSP41222 190 aa10.71□□□□□ -0.69
VPS13A-204ENST00000376634 NIT1Q86X76 327 aa10.71□□□□□ -0.69
VPS13A-204ENST00000376634 DUX3Q96PT4 197 aa10.71□□□□□ -0.69
VPS13A-204ENST00000376634 IDI2-AS1Q9NZ38 188 aa10.71□□□□□ -0.69
VPS13A-204ENST00000376634 RRHO14718 337 aa10.71□□□□□ -0.69
VPS13A-204ENST00000376634 GLI3P10071 1580 aa10.71□□□□□ -0.69
VPS13A-204ENST00000376634 PGPA6NDG6 321 aa10.71□□□□□ -0.69
VPS13A-204ENST00000376634 SCTP09683 121 aa10.71□□□□□ -0.69
VPS13A-204ENST00000376634 PPIAL4CA0A0B4J2A2 164 aa10.71□□□□□ -0.7
VPS13A-204ENST00000376634 PPIAL4GP0DN37 164 aa10.71□□□□□ -0.7
VPS13A-204ENST00000376634 DMRTA1Q5VZB9 504 aa10.71□□□□□ -0.7
VPS13A-204ENST00000376634 TRAV8-6A0A0B4J262 113 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 EIF3GO75821 320 aaKnown RBP eCLIP10.7□□□□□ -0.7
VPS13A-204ENST00000376634 CD69Q07108 199 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 CENPWQ5EE01 88 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 SFXN3Q9BWM7 321 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 PLSCR2Q9NRY7 297 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 Q5PR19 223 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 C8orf88P0DMB2 117 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 CTAG1AP78358 180 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 OR5AN1Q8NGI8 311 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 GGACTQ9BVM4 153 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 C19orf67A6NJJ6 358 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 SMRP1Q8NCR6 262 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 OR4D11Q8NGI4 311 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 ANAPC13Q9BS18 74 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 NPFFR1Q9GZQ6 430 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 CTSSP25774 331 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 DERL1Q9BUN8 251 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 TLNRD1Q9H1K6 362 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 DPRXA6NFQ7 191 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 C9JCJ5 164 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 ERGP11308 486 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 LINC00305Q7Z4B0 112 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 MARVELD3Q96A59 401 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 PCNX3Q9H6A9 2034 aa10.7□□□□□ -0.7
VPS13A-204ENST00000376634 IGHV1-45A0A0A0MS14 117 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 LRTM2Q8N967 370 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 NKX2-8O15522 239 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 FCARP24071 287 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 SH3BGRL3Q9H299 93 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 DPH3P1Q9H4G8 78 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 GLIPR1P48060 266 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 ZNF385AQ96PM9 386 aaKnown RBP10.69□□□□□ -0.7
VPS13A-204ENST00000376634 GRIFINA4D1Z8 144 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 ATP5LO75964 103 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 CKS1BP61024 79 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 PSG4Q00888 419 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 TRAV21A0A0B4J279 112 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 SYNGR3O43761 229 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 IL9P15248 144 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 ASIPP42127 132 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 WNT2BQ93097 391 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 WDR90Q96KV7 1748 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 M0R381 172 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 LCN2P80188 198 aa10.69□□□□□ -0.7
VPS13A-204ENST00000376634 RNASE4P34096 147 aaKnown RBP10.69□□□□□ -0.7
VPS13A-204ENST00000376634 ITLN2Q8WWU7 325 aaPredicted RBP10.69□□□□□ -0.7
VPS13A-204ENST00000376634 CITED2Q99967 270 aaPredicted RBP10.69□□□□□ -0.7
VPS13A-204ENST00000376634 NPIPB4C9JG80 1138 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 NPIPB8E9PQR5 432 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 NPIPB9F8W1W9 429 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 NPIPB7O75200 414 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 HOXA5P20719 270 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 DNM1P46Q6ZS02 220 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 MIXL1Q9H2W2 232 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 KLHDC2Q9Y2U9 406 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 NGFRP08138 427 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 DCAF12L2Q5VW00 463 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 KCNS1Q96KK3 526 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 TRAV8-2A0A0B4J237 113 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 A0A0G2JLM5 398 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 FAM90A10PA6NDY2 464 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 FAM90A18PA6NE21 464 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 FAM90A16PA6NEW6 464 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 FAM90A20PA6NIJ5 464 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 FAM90A8PA6NJQ4 464 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 FAM90A7PA6NKC0 464 aa10.68□□□□□ -0.7
VPS13A-204ENST00000376634 FAM90A22PA8MWA6 464 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 133.9 ms